Variant report

Variant	rs11513228
Chromosome Location	chr12:21411854-21411855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs1002552	1.00[ASN][1000 genomes]
rs10444413	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10841761	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841766	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841767	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841768	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841784	1.00[ASN][1000 genomes]
rs10841789	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10841795	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045729	1.00[ASN][1000 genomes]
rs11045736	1.00[ASN][1000 genomes]
rs11045737	1.00[ASN][1000 genomes]
rs11045742	1.00[CHB][hapmap]
rs11045771	1.00[ASN][1000 genomes]
rs11045772	1.00[ASN][1000 genomes]
rs11045773	1.00[ASN][1000 genomes]
rs11045780	1.00[ASN][1000 genomes]
rs11045781	1.00[ASN][1000 genomes]
rs11045783	1.00[ASN][1000 genomes]
rs11045785	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045786	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045787	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045796	1.00[ASN][1000 genomes]
rs11045797	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045798	1.00[ASN][1000 genomes]
rs11045799	1.00[ASN][1000 genomes]
rs11045801	1.00[ASN][1000 genomes]
rs11045803	1.00[ASN][1000 genomes]
rs11045805	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045806	1.00[ASN][1000 genomes]
rs11045807	1.00[ASN][1000 genomes]
rs11045813	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045816	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045818	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045819	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045820	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045821	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045823	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045824	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045825	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045831	1.00[ASN][1000 genomes]
rs11045832	1.00[ASN][1000 genomes]
rs11045843	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11045856	1.00[ASN][1000 genomes]
rs11045858	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045862	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045863	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045873	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045874	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045884	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045887	0.91[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045892	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045893	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045916	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045917	1.00[ASN][1000 genomes]
rs11045918	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045928	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045930	1.00[ASN][1000 genomes]
rs11045942	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045946	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045952	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045953	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045956	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045957	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045958	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045960	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045961	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045972	1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11045978	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11045981	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11494720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11513226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11513411	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11522782	1.00[ASN][1000 genomes]
rs12307908	1.00[ASN][1000 genomes]
rs12311451	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12318689	1.00[CHB][hapmap]
rs12367829	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12368356	1.00[ASN][1000 genomes]
rs12368481	1.00[ASN][1000 genomes]
rs12370842	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371160	1.00[ASN][1000 genomes]
rs12371570	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12371691	1.00[ASN][1000 genomes]
rs12372124	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12372260	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12811381	1.00[CHB][hapmap]
rs12812279	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12814646	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12815795	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12819994	1.00[ASN][1000 genomes]
rs12820529	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12821068	1.00[ASN][1000 genomes]
rs12821228	1.00[ASN][1000 genomes]
rs12821721	1.00[ASN][1000 genomes]
rs12829704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12830545	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564367	1.00[ASN][1000 genomes]
rs1564369	1.00[ASN][1000 genomes]
rs17328763	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17329885	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2169969	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2199684	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2199686	1.00[ASN][1000 genomes]
rs2417972	1.00[ASN][1000 genomes]
rs28802276	1.00[ASN][1000 genomes]
rs2900480	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34022980	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34111581	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34211424	1.00[ASN][1000 genomes]
rs34249976	1.00[ASN][1000 genomes]
rs34632551	1.00[ASN][1000 genomes]
rs34888642	1.00[ASN][1000 genomes]
rs35157563	1.00[ASN][1000 genomes]
rs35236625	1.00[ASN][1000 genomes]
rs35406304	1.00[ASN][1000 genomes]
rs35462387	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35642680	1.00[ASN][1000 genomes]
rs35736956	1.00[ASN][1000 genomes]
rs35901590	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35928112	1.00[ASN][1000 genomes]
rs3794320	1.00[ASN][1000 genomes]
rs4337089	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4381410	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs4442593	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55708035	1.00[ASN][1000 genomes]
rs55720923	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs55773124	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55820200	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56164184	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487215	1.00[ASN][1000 genomes]
rs66777941	1.00[ASN][1000 genomes]
rs7137060	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446755	1.00[ASN][1000 genomes]
rs71446757	1.00[ASN][1000 genomes]
rs71446760	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446761	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446763	1.00[ASN][1000 genomes]
rs7485550	1.00[ASN][1000 genomes]
rs7957274	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7960384	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960688	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7962263	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7962919	1.00[ASN][1000 genomes]
rs7965059	1.00[ASN][1000 genomes]
rs7967303	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7967403	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7977197	1.00[ASN][1000 genomes]
rs7978322	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898872	chr12:21000586-21413632	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv898885	chr12:21352541-21416413	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv898886	chr12:21354494-21450250	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv898887	chr12:21355537-21416413	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv898888	chr12:21355537-21426087	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3390939	chr12:21393734-21418537	Enhancers Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21411000-21460400	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:21411800-21412600	Strong transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links