Variant report

Variant	rs1564369
Chromosome Location	chr12:21335290-21335291
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 203 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs1002552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10444413	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10841761	1.00[ASN][1000 genomes]
rs10841766	1.00[ASN][1000 genomes]
rs10841767	1.00[ASN][1000 genomes]
rs10841768	1.00[ASN][1000 genomes]
rs10841784	1.00[ASN][1000 genomes]
rs10841789	1.00[ASN][1000 genomes]
rs10841795	1.00[ASN][1000 genomes]
rs11045655	1.00[ASN][1000 genomes]
rs11045657	1.00[ASN][1000 genomes]
rs11045699	1.00[ASN][1000 genomes]
rs11045701	1.00[ASN][1000 genomes]
rs11045702	1.00[ASN][1000 genomes]
rs11045703	1.00[ASN][1000 genomes]
rs11045704	1.00[ASN][1000 genomes]
rs11045711	1.00[ASN][1000 genomes]
rs11045715	1.00[ASN][1000 genomes]
rs11045717	1.00[ASN][1000 genomes]
rs11045729	1.00[ASN][1000 genomes]
rs11045736	1.00[ASN][1000 genomes]
rs11045737	1.00[ASN][1000 genomes]
rs11045771	1.00[ASN][1000 genomes]
rs11045772	1.00[ASN][1000 genomes]
rs11045773	1.00[ASN][1000 genomes]
rs11045780	1.00[ASN][1000 genomes]
rs11045781	1.00[ASN][1000 genomes]
rs11045783	1.00[ASN][1000 genomes]
rs11045785	1.00[ASN][1000 genomes]
rs11045786	1.00[ASN][1000 genomes]
rs11045787	1.00[ASN][1000 genomes]
rs11045796	1.00[ASN][1000 genomes]
rs11045797	1.00[ASN][1000 genomes]
rs11045798	1.00[ASN][1000 genomes]
rs11045799	1.00[ASN][1000 genomes]
rs11045801	1.00[ASN][1000 genomes]
rs11045803	1.00[ASN][1000 genomes]
rs11045805	1.00[ASN][1000 genomes]
rs11045806	1.00[ASN][1000 genomes]
rs11045807	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045813	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045816	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045818	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045819	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045820	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045821	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045823	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045824	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045825	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045843	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11045856	1.00[ASN][1000 genomes]
rs11045858	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045862	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045863	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11045870	1.00[ASN][1000 genomes]
rs11045871	1.00[ASN][1000 genomes]
rs11045872	1.00[ASN][1000 genomes]
rs11045873	1.00[ASN][1000 genomes]
rs11045874	1.00[ASN][1000 genomes]
rs11045884	1.00[ASN][1000 genomes]
rs11045887	1.00[ASN][1000 genomes]
rs11045891	1.00[ASN][1000 genomes]
rs11045892	1.00[ASN][1000 genomes]
rs11045893	1.00[ASN][1000 genomes]
rs11045897	1.00[ASN][1000 genomes]
rs11045916	1.00[ASN][1000 genomes]
rs11045917	1.00[ASN][1000 genomes]
rs11045918	1.00[ASN][1000 genomes]
rs11045928	1.00[ASN][1000 genomes]
rs11045930	1.00[ASN][1000 genomes]
rs11045942	1.00[ASN][1000 genomes]
rs11045946	1.00[ASN][1000 genomes]
rs11045952	1.00[ASN][1000 genomes]
rs11045953	1.00[ASN][1000 genomes]
rs11045956	1.00[ASN][1000 genomes]
rs11045957	1.00[ASN][1000 genomes]
rs11045958	1.00[ASN][1000 genomes]
rs11045960	1.00[ASN][1000 genomes]
rs11045961	1.00[ASN][1000 genomes]
rs11045972	1.00[ASN][1000 genomes]
rs11045978	1.00[ASN][1000 genomes]
rs11045981	1.00[ASN][1000 genomes]
rs11494720	1.00[ASN][1000 genomes]
rs11513224	1.00[ASN][1000 genomes]
rs11513226	1.00[ASN][1000 genomes]
rs11513228	1.00[ASN][1000 genomes]
rs11513411	1.00[ASN][1000 genomes]
rs11519266	1.00[ASN][1000 genomes]
rs11522782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12307908	1.00[ASN][1000 genomes]
rs12311451	1.00[ASN][1000 genomes]
rs12366994	0.82[AMR][1000 genomes]
rs12367829	1.00[ASN][1000 genomes]
rs12368356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12368481	1.00[ASN][1000 genomes]
rs12370842	1.00[ASN][1000 genomes]
rs12371160	1.00[ASN][1000 genomes]
rs12371390	1.00[ASN][1000 genomes]
rs12371570	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12371691	1.00[ASN][1000 genomes]
rs12372124	1.00[ASN][1000 genomes]
rs12372260	1.00[ASN][1000 genomes]
rs12372374	1.00[ASN][1000 genomes]
rs12811381	1.00[ASN][1000 genomes]
rs12812279	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12814646	1.00[ASN][1000 genomes]
rs12815795	1.00[ASN][1000 genomes]
rs12819994	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12820529	1.00[ASN][1000 genomes]
rs12821068	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821228	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821721	1.00[ASN][1000 genomes]
rs12827231	1.00[ASN][1000 genomes]
rs12829704	1.00[ASN][1000 genomes]
rs12830545	1.00[ASN][1000 genomes]
rs1564367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17328763	1.00[ASN][1000 genomes]
rs17329885	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1910166	1.00[ASN][1000 genomes]
rs2169969	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2199684	1.00[ASN][1000 genomes]
rs2199686	1.00[ASN][1000 genomes]
rs2417972	1.00[ASN][1000 genomes]
rs28802276	1.00[ASN][1000 genomes]
rs2900480	1.00[ASN][1000 genomes]
rs34022980	1.00[ASN][1000 genomes]
rs34111581	1.00[ASN][1000 genomes]
rs34211424	1.00[ASN][1000 genomes]
rs34249976	1.00[ASN][1000 genomes]
rs34632551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34712739	1.00[ASN][1000 genomes]
rs34888642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35157563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35236625	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35406304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35462387	1.00[ASN][1000 genomes]
rs35642680	1.00[ASN][1000 genomes]
rs35736956	1.00[ASN][1000 genomes]
rs35901590	1.00[ASN][1000 genomes]
rs35928112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3794320	1.00[ASN][1000 genomes]
rs4337089	1.00[ASN][1000 genomes]
rs4381410	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4442593	1.00[ASN][1000 genomes]
rs55708035	1.00[ASN][1000 genomes]
rs55720923	1.00[ASN][1000 genomes]
rs55773124	1.00[ASN][1000 genomes]
rs55820200	1.00[ASN][1000 genomes]
rs56164184	1.00[ASN][1000 genomes]
rs6487215	1.00[ASN][1000 genomes]
rs66777941	1.00[ASN][1000 genomes]
rs7137060	1.00[ASN][1000 genomes]
rs71446755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71446756	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs71446757	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs71446760	1.00[ASN][1000 genomes]
rs71446761	1.00[ASN][1000 genomes]
rs71446762	1.00[ASN][1000 genomes]
rs71446763	1.00[ASN][1000 genomes]
rs7485550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957274	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960384	1.00[ASN][1000 genomes]
rs7960688	1.00[ASN][1000 genomes]
rs7962263	1.00[ASN][1000 genomes]
rs7962919	1.00[ASN][1000 genomes]
rs7965059	1.00[ASN][1000 genomes]
rs7967303	1.00[ASN][1000 genomes]
rs7967403	1.00[ASN][1000 genomes]
rs7977197	1.00[ASN][1000 genomes]
rs7978322	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:31 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898872	chr12:21000586-21413632	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1045460	chr12:21007732-21348247	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1048648	chr12:21007732-21410089	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949142	chr12:21008498-21382619	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv948700	chr12:21008498-21422492	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv531958	chr12:21008499-21377322	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1047113	chr12:21008519-21402544	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv541411	chr12:21008519-21402544	ZNF genes & repeats Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv515735	chr12:21010048-21420712	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv933139	chr12:21011077-21404166	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv557710	chr12:21011480-21404832	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1038517	chr12:21017375-21356781	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv541412	chr12:21017375-21356781	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv1052893	chr12:21017376-21356782	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv541413	chr12:21017376-21356782	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1051005	chr12:21017575-21356642	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv541414	chr12:21017575-21356642	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv933316	chr12:21017576-21404166	ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv916519	chr12:21017673-21356568	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv469159	chr12:21124371-21404832	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv557717	chr12:21124371-21404832	Enhancers Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv1052587	chr12:21149131-21420712	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1050396	chr12:21152478-21420712	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv1054132	chr12:21165101-21402544	Enhancers Strong transcription Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
25	nsv541415	chr12:21165101-21402544	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
26	nsv933284	chr12:21171894-21404166	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
27	esv3439156	chr12:21207396-21370189	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
28	nsv1041711	chr12:21236384-21402544	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	nsv1048033	chr12:21267568-21336958	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv898883	chr12:21294293-21450917	Enhancers Active TSS Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv1795634	chr12:21330988-21393018	ZNF genes & repeats Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21326800-21336800	Strong transcription	Liver	Liver
2	chr12:21335000-21336400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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