Variant report

Variant	rs1151919
Chromosome Location	chr20:13347963-13347964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:13345711..13348260-chr20:13352003..13353913,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1474954	0.83[CHB][hapmap]
rs1474955	0.83[CHB][hapmap]
rs1474956	0.81[JPT][hapmap]
rs1884796	0.82[CHB][hapmap]
rs1884797	0.82[CHB][hapmap]
rs1998123	0.82[CHB][hapmap]
rs2001178	0.83[CHB][hapmap]
rs2057256	0.83[CHB][hapmap]
rs2070306	0.82[CHD][hapmap]
rs2273477	0.83[CHB][hapmap]
rs2876344	0.82[ASN][1000 genomes]
rs3761890	0.81[CHD][hapmap]
rs3803973	0.83[CHB][hapmap];0.82[CHD][hapmap];0.81[JPT][hapmap]
rs3827702	0.83[CHB][hapmap]
rs3827703	0.83[CHB][hapmap]
rs4813126	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4813132	0.83[CHB][hapmap]
rs4813134	0.83[CHB][hapmap]
rs4813135	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs4814233	0.81[JPT][hapmap]
rs518981	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs527865	0.90[ASN][1000 genomes]
rs529646	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs591089	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs593846	0.87[ASN][1000 genomes]
rs6033685	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6033687	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6033688	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6033705	0.83[CHB][hapmap]
rs6033749	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs6033756	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs6042188	0.83[CHB][hapmap]
rs6042192	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs6042211	0.82[CHB][hapmap]
rs6074605	0.83[CHB][hapmap]
rs6074610	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs6079032	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6079035	0.82[CHD][hapmap];0.81[JPT][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs6079042	0.81[TSI][hapmap]
rs6079097	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs608239	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6105087	0.83[CHB][hapmap]
rs6109847	0.83[ASN][1000 genomes]
rs6109854	0.83[CHB][hapmap]
rs6109862	0.82[CHD][hapmap];0.81[JPT][hapmap];0.82[TSI][hapmap]
rs6109935	0.82[CHB][hapmap]
rs6131471	0.81[JPT][hapmap]
rs6134862	0.81[JPT][hapmap]
rs6134870	0.83[CHB][hapmap]
rs657719	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7265499	0.82[ASN][1000 genomes]
rs743183	0.83[CHB][hapmap]
rs911014	0.83[CHB][hapmap];0.82[CHD][hapmap]
rs932568	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv21228	chr20:13283535-13447810	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1062049	chr20:13347580-13477455	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv544186	chr20:13347580-13477455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13310200-13350000	Weak transcription	Pancreas	Pancrea
2	chr20:13325600-13354000	Weak transcription	Dnd41	blood
3	chr20:13344000-13348800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr20:13344400-13348800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:13344600-13352000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr20:13344800-13351600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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