Variant report
Variant | rs6033685 |
---|---|
Chromosome Location | chr20:13353637-13353638 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:13345711..13348260-chr20:13352003..13353913,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1151919 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1474956 | 0.82[ASN][1000 genomes] |
rs2876344 | 0.80[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs4813126 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs4814233 | 0.82[ASN][1000 genomes] |
rs518981 | 0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs527865 | 0.96[ASN][1000 genomes] |
rs529646 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs591089 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs593846 | 0.94[ASN][1000 genomes] |
rs6033686 | 0.84[ASN][1000 genomes] |
rs6033687 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6033688 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6042059 | 0.84[ASN][1000 genomes] |
rs6074604 | 0.82[ASN][1000 genomes] |
rs6074610 | 0.83[ASN][1000 genomes] |
rs6079032 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6079035 | 0.93[ASN][1000 genomes] |
rs6079042 | 0.81[ASN][1000 genomes] |
rs6079043 | 0.82[ASN][1000 genomes] |
rs6079048 | 0.83[ASN][1000 genomes] |
rs608239 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6109847 | 0.91[ASN][1000 genomes] |
rs6109862 | 0.82[ASN][1000 genomes] |
rs6131471 | 0.82[ASN][1000 genomes] |
rs6134862 | 0.82[ASN][1000 genomes] |
rs657719 | 0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7265499 | 0.89[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3425983 | chr20:13046768-13461834 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | esv21228 | chr20:13283535-13447810 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv1062049 | chr20:13347580-13477455 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv544186 | chr20:13347580-13477455 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:13325600-13354000 | Weak transcription | Dnd41 | blood |