The 2.0 version of rSNPBase

Variant report

Variant rs6079043
Chromosome Location chr20:13378488-13378489
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:13362800-13380600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
2 chr20:13364400-13415400 Weak transcription Right Ventricle heart
3 chr20:13364600-13379000 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr20:13364600-13416800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
5 chr20:13368600-13382400 Weak transcription HMEC breast
6 chr20:13368600-13397400 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr20:13368800-13392200 Weak transcription Aorta Aorta
8 chr20:13369000-13411200 Strong transcription Dnd41 blood
9 chr20:13369400-13380200 Weak transcription Psoas Muscle Psoas
10 chr20:13369400-13397000 Weak transcription Primary B cells from cord blood blood
11 chr20:13369400-13397200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr20:13369600-13397000 Weak transcription Fetal Thymus thymus
13 chr20:13370000-13382400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
14 chr20:13371400-13413600 Weak transcription Ovary ovary
15 chr20:13371800-13397200 Weak transcription Primary T cells from cord blood blood
16 chr20:13372000-13382000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
17 chr20:13372000-13395800 Weak transcription HepG2 liver
18 chr20:13372000-13396400 Weak transcription Primary T helper cells fromperipheralblood blood
19 chr20:13372000-13397400 Weak transcription Primary B cells from peripheral blood blood
20 chr20:13372000-13397400 Weak transcription Left Ventricle heart
21 chr20:13372000-13397400 Weak transcription Thymus Thymus
22 chr20:13372200-13381400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr20:13374200-13380600 Weak transcription Spleen Spleen
24 chr20:13374200-13417200 Weak transcription Fetal Muscle Trunk muscle
25 chr20:13374400-13380400 Weak transcription Fetal Lung lung
26 chr20:13374400-13382400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
27 chr20:13374400-13382800 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr20:13374400-13384000 Weak transcription Pancreas Pancrea
29 chr20:13374400-13410800 Weak transcription Primary hematopoietic stem cells blood
30 chr20:13374600-13397400 Weak transcription Fetal Intestine Small intestine
31 chr20:13374600-13399400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
32 chr20:13374600-13405800 Weak transcription Fetal Stomach stomach
33 chr20:13375800-13378800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr20:13375800-13379200 Enhancers HSMM muscle
35 chr20:13375800-13379400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
36 chr20:13376000-13379200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr20:13376400-13378800 Enhancers HSMMtube muscle
38 chr20:13376400-13379000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr20:13376600-13378600 Enhancers Muscle Satellite Cultured Cells --
40 chr20:13376800-13378600 Enhancers Osteobl bone
41 chr20:13376800-13381600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
42 chr20:13377200-13379000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr20:13377400-13379400 Enhancers Colon Smooth Muscle Colon
44 chr20:13377600-13378800 Enhancers Rectal Smooth Muscle rectum
45 chr20:13377800-13378600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr20:13377800-13382400 Weak transcription NHDF-Ad bronchial
47 chr20:13378400-13378600 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
48 chr20:13378400-13379200 Enhancers GM12878-XiMat blood
49 chr20:13378400-13380600 Weak transcription Stomach Smooth Muscle stomach

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015