Variant report
| Variant | rs6033686 |
|---|---|
| Chromosome Location | chr20:13358892-13358893 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs2876344 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4813126 | 0.87[ASN][1000 genomes] |
| rs518981 | 0.86[ASN][1000 genomes] |
| rs527865 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs529646 | 0.86[ASN][1000 genomes] |
| rs591089 | 0.86[ASN][1000 genomes] |
| rs593846 | 0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6033685 | 0.84[ASN][1000 genomes] |
| rs6033687 | 0.95[ASN][1000 genomes] |
| rs6033688 | 0.91[ASN][1000 genomes] |
| rs6042059 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6074604 | 0.81[ASN][1000 genomes] |
| rs6079032 | 0.90[ASN][1000 genomes] |
| rs6079035 | 0.86[ASN][1000 genomes] |
| rs6079042 | 0.81[ASN][1000 genomes] |
| rs6079043 | 0.81[ASN][1000 genomes] |
| rs608239 | 0.86[ASN][1000 genomes] |
| rs6109847 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7265499 | 0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs911014 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3425983 | chr20:13046768-13461834 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv21228 | chr20:13283535-13447810 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1062049 | chr20:13347580-13477455 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv544186 | chr20:13347580-13477455 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:13358800-13365600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
