Variant report

Variant	rs6079032
Chromosome Location	chr20:13361939-13361940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1151919	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2876344	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4813126	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4814234	0.82[ASN][1000 genomes]
rs518981	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs527865	0.91[ASN][1000 genomes]
rs529646	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs591089	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs593846	0.89[ASN][1000 genomes]
rs6033685	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6033686	0.90[ASN][1000 genomes]
rs6033687	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6033688	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6033705	0.82[ASN][1000 genomes]
rs6042059	0.90[ASN][1000 genomes]
rs6074604	0.90[ASN][1000 genomes]
rs6074605	0.86[ASN][1000 genomes]
rs6074610	0.82[ASN][1000 genomes]
rs6079035	0.94[ASN][1000 genomes]
rs6079037	0.86[ASN][1000 genomes]
rs6079042	0.89[ASN][1000 genomes]
rs6079043	0.90[ASN][1000 genomes]
rs6079048	0.82[ASN][1000 genomes]
rs6079062	0.85[ASN][1000 genomes]
rs6079063	0.85[ASN][1000 genomes]
rs608239	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6109847	0.98[ASN][1000 genomes]
rs6109854	0.85[ASN][1000 genomes]
rs6109862	0.81[ASN][1000 genomes]
rs6131471	0.81[ASN][1000 genomes]
rs6134862	0.81[ASN][1000 genomes]
rs6134870	0.85[ASN][1000 genomes]
rs657719	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7265499	1.00[ASN][1000 genomes]
rs743183	0.84[ASN][1000 genomes]
rs932568	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3425983	chr20:13046768-13461834	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv21228	chr20:13283535-13447810	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1062049	chr20:13347580-13477455	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv544186	chr20:13347580-13477455	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:13358800-13365600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:13360200-13368200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr20:13360600-13363600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:13360800-13362400	Enhancers	HepG2	liver
5	chr20:13360800-13363600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:13361800-13362200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr20:13361800-13362800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr20:13361800-13362800	ZNF genes & repeats	Aorta	Aorta
9	chr20:13361800-13362800	ZNF genes & repeats	Gastric	stomach
10	chr20:13361800-13364400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:13361800-13364600	ZNF genes & repeats	Dnd41	blood
12	chr20:13361800-13369400	Weak transcription	Stomach Smooth Muscle	stomach

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