Variant report

Variant	rs11525961
Chromosome Location	chr9:108328887-108328888
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1018848	0.81[ASN][1000 genomes]
rs1018849	0.81[ASN][1000 genomes]
rs1024366	0.88[EUR][1000 genomes]
rs10820805	0.80[AMR][1000 genomes]
rs10820806	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820807	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820816	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10991661	0.80[AMR][1000 genomes]
rs10991662	0.80[AMR][1000 genomes]
rs10991664	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991666	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10991669	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991675	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991680	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991686	0.89[AMR][1000 genomes]
rs10991688	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12235779	0.80[AMR][1000 genomes]
rs1327351	0.80[AMR][1000 genomes]
rs1329021	0.80[AMR][1000 genomes]
rs1576285	0.80[AMR][1000 genomes]
rs16924672	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16924676	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1928293	0.80[AMR][1000 genomes]
rs1928294	0.80[AMR][1000 genomes]
rs2010861	0.85[EUR][1000 genomes]
rs2068266	0.80[AMR][1000 genomes]
rs2518109	0.87[EUR][1000 genomes]
rs2518113	0.80[AMR][1000 genomes]
rs2518117	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2518118	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2518119	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518122	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2518127	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2518132	0.89[EUR][1000 genomes]
rs2518133	0.89[EUR][1000 genomes]
rs2768278	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2768282	0.87[EUR][1000 genomes]
rs2768284	0.80[AMR][1000 genomes]
rs2768285	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2768286	0.80[AMR][1000 genomes]
rs2768288	0.80[AMR][1000 genomes]
rs2768293	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2768295	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2768296	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2904847	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56134629	0.80[AMR][1000 genomes]
rs72744266	0.80[AMR][1000 genomes]
rs879115	0.87[EUR][1000 genomes]
rs879117	0.87[EUR][1000 genomes]
rs879118	0.85[EUR][1000 genomes]
rs885955	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049133	chr9:108292302-108356068	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108321200-108335600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:108321600-108336000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr9:108321600-108336800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:108321600-108336800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr9:108321600-108338000	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:108321600-108353600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:108321600-108354000	Weak transcription	Right Ventricle	heart
8	chr9:108321600-108360200	Weak transcription	HSMM	muscle
9	chr9:108321600-108397200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:108322200-108334600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr9:108324600-108334400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:108324800-108353800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr9:108325400-108334600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:108325400-108335000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:108325400-108337800	Weak transcription	Dnd41	blood
16	chr9:108325400-108339200	Weak transcription	Fetal Brain Male	brain
17	chr9:108325400-108357200	Weak transcription	A549	lung
18	chr9:108325600-108336600	Weak transcription	Fetal Lung	lung
19	chr9:108325600-108353200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr9:108325600-108353200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr9:108325600-108353800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:108325800-108353800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr9:108326000-108334000	Weak transcription	Left Ventricle	heart
24	chr9:108326000-108334600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr9:108326000-108338200	Weak transcription	Ovary	ovary
26	chr9:108328000-108372800	Weak transcription	NHEK	skin

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