Variant report

Variant	rs2010861
Chromosome Location	chr9:108402805-108402806
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108400818..108403460-chr9:108405807..108408679,2	K562	blood:
2	chr9:108400600..108402470-chr9:108402643..108404478,2	MCF-7	breast:
3	chr9:108395259..108397968-chr9:108400674..108403020,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1018848	0.83[AFR][1000 genomes]
rs1024366	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820806	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820807	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991664	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991666	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10991669	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991675	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991680	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991688	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11399147	0.81[ASN][1000 genomes]
rs11525961	0.85[EUR][1000 genomes]
rs16924672	0.80[EUR][1000 genomes]
rs16924676	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1858744	0.81[ASN][1000 genomes]
rs2518109	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518117	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2518118	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2518119	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2518122	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2518127	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2518132	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2518133	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2768278	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2768282	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2768285	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2768293	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2768295	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2768296	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2904847	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs879115	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs879117	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs879118	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108335400-108403400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr9:108338400-108403400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr9:108350800-108403800	Weak transcription	Fetal Heart	heart
4	chr9:108354400-108403600	Weak transcription	Brain Substantia Nigra	brain
5	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
6	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr9:108355200-108404200	Weak transcription	Brain Germinal Matrix	brain
8	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:108356000-108403800	Weak transcription	Fetal Thymus	thymus
10	chr9:108358200-108405000	Weak transcription	HUVEC	blood vessel
11	chr9:108366800-108403400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr9:108366800-108405400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr9:108366800-108418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr9:108366800-108418200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:108367200-108403400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr9:108367400-108407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:108373200-108404600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr9:108383400-108403400	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:108384200-108403600	Weak transcription	Fetal Brain Female	brain
20	chr9:108384400-108403800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr9:108389600-108403200	Weak transcription	A549	lung
22	chr9:108391800-108404600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr9:108392000-108407000	Weak transcription	Fetal Lung	lung
24	chr9:108394600-108403600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr9:108396200-108403400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr9:108396200-108409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:108396600-108403800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:108397400-108405200	Weak transcription	Aorta	Aorta
29	chr9:108397600-108404000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:108397600-108404000	Weak transcription	Fetal Stomach	stomach
31	chr9:108397600-108404000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr9:108397600-108404200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr9:108397600-108409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:108397600-108411800	Weak transcription	Lung	lung
35	chr9:108397800-108407000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr9:108398000-108403600	Weak transcription	Liver	Liver
37	chr9:108398000-108405000	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:108398400-108403200	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr9:108398400-108404800	Weak transcription	Dnd41	blood
40	chr9:108398400-108408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr9:108399000-108403600	Weak transcription	Brain Anterior Caudate	brain
42	chr9:108399200-108405000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr9:108400000-108404200	Weak transcription	Fetal Intestine Large	intestine
44	chr9:108400000-108404800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:108400200-108403600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr9:108400200-108403800	Weak transcription	Left Ventricle	heart
47	chr9:108400200-108404800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:108400200-108405400	Weak transcription	Primary B cells from cord blood	blood
49	chr9:108400200-108409000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr9:108400400-108403600	Weak transcription	Stomach Smooth Muscle	stomach

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