Variant report

Variant	rs879118
Chromosome Location	chr9:108408440-108408441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108396793..108398414-chr9:108407668..108410214,2	K562	blood:
2	chr9:108396717..108400413-chr9:108407791..108411231,4	K562	blood:
3	chr9:108400818..108403460-chr9:108405807..108408679,2	K562	blood:
4	chr9:108407196..108409078-chr9:108410367..108412301,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1018848	1.00[AFR][1000 genomes]
rs1024366	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10820806	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10820807	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991664	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991666	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10991669	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10991675	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991680	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10991688	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11525961	0.85[EUR][1000 genomes]
rs16924672	0.80[EUR][1000 genomes]
rs16924676	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2010861	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2518109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518117	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2518118	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2518119	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2518122	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2518127	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2518132	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2518133	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2768278	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2768282	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2768285	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2768293	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2768295	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2768296	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2904847	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs879115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519023	chr9:108371549-108454745	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108354400-108412400	Weak transcription	Right Ventricle	heart
2	chr9:108354600-108412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:108355200-108409200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:108366800-108418200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr9:108366800-108418200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:108396200-108409200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:108397600-108409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:108397600-108411800	Weak transcription	Lung	lung
9	chr9:108398400-108408800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:108400200-108409000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr9:108401600-108418000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr9:108402800-108409600	Weak transcription	Ovary	ovary
13	chr9:108403800-108410200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:108407000-108409000	Enhancers	K562	blood
15	chr9:108408400-108410400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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