Variant report

Variant	rs1153358
Chromosome Location	chr21:16092589-16092590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11910465	1.00[YRI][hapmap]
rs1292735	0.95[YRI][hapmap]
rs1292739	0.85[ASW][hapmap];0.81[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1292741	0.94[YRI][hapmap]
rs1292744	0.95[YRI][hapmap]
rs2169079	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2822899	0.80[JPT][hapmap]
rs423804	0.85[LWK][hapmap];1.00[YRI][hapmap]
rs62218098	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1153358	SAMSN1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16091000-16092600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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