Variant report

Variant	rs1292739
Chromosome Location	chr21:16110191-16110192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1153358	0.85[ASW][hapmap];0.81[CEU][hapmap];0.81[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap];0.91[MEX][hapmap];0.81[MKK][hapmap];0.95[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11910465	0.94[YRI][hapmap]
rs1292735	0.90[YRI][hapmap]
rs1292741	0.89[YRI][hapmap]
rs1292744	0.90[YRI][hapmap]
rs2169079	0.89[GIH][hapmap];0.86[JPT][hapmap]
rs2822879	0.83[CHB][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2822882	0.84[ASN][1000 genomes]
rs2822899	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs423804	0.94[YRI][hapmap]
rs55893755	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1292739	SAMSN1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16107800-16110600	Enhancers	Dnd41	blood
2	chr21:16108600-16110400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
3	chr21:16109000-16110400	Enhancers	Primary hematopoietic stem cells	blood
4	chr21:16109200-16110200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr21:16109400-16110200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr21:16109400-16110200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr21:16109400-16110400	Enhancers	HUVEC	blood vessel
8	chr21:16109400-16110600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr21:16109600-16110200	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr21:16109600-16110400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr21:16109600-16110400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr21:16110000-16110400	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr21:16110000-16110400	Enhancers	GM12878-XiMat	blood
14	chr21:16110000-16111400	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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