Variant report

Variant	rs11537856
Chromosome Location	chr12:121442883-121442884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:121442573-121443738	A549	lung:	n/a	chr12:121443298-121443311
2	ZNF274	chr12:121442592-121442922	NT2-D1	testis:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:121441915..121444188-chr12:121446625..121449115,2	K562	blood:
2	chr12:121442839..121443768-chr12:121497604..121498594,3	MCF-7	breast:
3	chr12:121291153..121292656-chr12:121442284..121444744,2	MCF-7	breast:
4	chr12:121124381..121127314-chr12:121441274..121443258,2	K562	blood:
5	chr12:121437912..121440467-chr12:121441258..121443495,3	MCF-7	breast:
6	chr12:121442823..121443336-chr12:121547928..121548775,2	MCF-7	breast:
7	chr12:121442844..121443785-chr12:121547734..121548804,3	K562	blood:
8	chr12:121427353..121429838-chr12:121441548..121443367,3	K562	blood:
9	chr12:121442812..121445650-chr12:121451524..121454471,3	K562	blood:
10	chr12:121442771..121443720-chr12:121533793..121534340,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271769	TF binding region
ENSG00000157895	Chromatin interaction
ENSG00000110917	Chromatin interaction
ENSG00000271769	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1169293	1.00[ASN][1000 genomes]
rs2245407	1.00[ASN][1000 genomes]
rs2393795	1.00[AFR][1000 genomes]
rs3213547	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41279100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55660034	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55811663	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55919842	0.89[AMR][1000 genomes]
rs55961602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56046951	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56132398	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56280478	1.00[AFR][1000 genomes]
rs56298275	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56357425	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56360386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61953351	1.00[ASN][1000 genomes]
rs73214128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73214141	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214143	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73214162	0.96[EUR][1000 genomes]
rs73224338	1.00[AFR][1000 genomes]
rs73224341	1.00[AFR][1000 genomes]
rs73224342	1.00[AFR][1000 genomes]
rs73226262	1.00[AFR][1000 genomes]
rs73226263	1.00[AFR][1000 genomes]
rs73226267	1.00[AFR][1000 genomes]
rs73226273	1.00[AFR][1000 genomes]
rs73226287	1.00[AFR][1000 genomes]
rs73226292	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv1037070	chr12:121069938-121459047	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv899559	chr12:121324727-121592689	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv899560	chr12:121371233-121560581	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv899561	chr12:121376416-121525591	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv899562	chr12:121376416-121565870	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1037195	chr12:121408540-121470375	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	esv2758318	chr12:121415845-121584813	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	esv2759917	chr12:121415845-121584813	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
10	nsv1039216	chr12:121421701-121538491	Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv832531	chr12:121440495-121604232	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121429800-121451600	Strong transcription	Rectal Mucosa Donor 29	rectum
2	chr12:121433200-121448200	Weak transcription	Fetal Kidney	kidney
3	chr12:121436600-121452800	Weak transcription	Fetal Heart	heart
4	chr12:121437600-121452000	Strong transcription	Fetal Stomach	stomach
5	chr12:121437600-121453000	Weak transcription	Fetal Brain Male	brain
6	chr12:121437600-121453600	Weak transcription	Right Atrium	heart
7	chr12:121437800-121451200	Strong transcription	A549	lung
8	chr12:121438400-121448000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr12:121438400-121451200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr12:121438400-121451400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:121438600-121444800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr12:121438600-121445000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr12:121438600-121449000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:121438600-121451200	Strong transcription	Spleen	Spleen
15	chr12:121438600-121451400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr12:121438600-121451400	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr12:121438600-121451600	Strong transcription	Primary T cells from cord blood	blood
18	chr12:121438600-121451800	Strong transcription	Fetal Muscle Trunk	muscle
19	chr12:121438800-121443600	Strong transcription	Esophagus	oesophagus
20	chr12:121438800-121444200	Strong transcription	Lung	lung
21	chr12:121438800-121444800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr12:121438800-121450200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:121438800-121450400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr12:121438800-121451200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr12:121438800-121451400	Strong transcription	Fetal Muscle Leg	muscle
26	chr12:121438800-121451600	Strong transcription	Stomach Smooth Muscle	stomach
27	chr12:121438800-121451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr12:121438800-121451800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr12:121438800-121451800	Strong transcription	Fetal Brain Female	brain
30	chr12:121439000-121451200	Strong transcription	Brain Germinal Matrix	brain
31	chr12:121439000-121451400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr12:121439000-121451600	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr12:121439000-121451800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr12:121439200-121443800	Strong transcription	Brain Anterior Caudate	brain
35	chr12:121439200-121444200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr12:121439200-121444400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr12:121439200-121445200	Weak transcription	K562	blood
38	chr12:121439200-121445600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr12:121439200-121450400	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr12:121439200-121451600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr12:121439200-121451800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr12:121439400-121443000	Strong transcription	HUES6 Cell Line	embryonic stem cell
43	chr12:121439400-121450200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr12:121439400-121451400	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr12:121439400-121451400	Strong transcription	Adipose Nuclei	Adipose
46	chr12:121439400-121451600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr12:121439400-121451600	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr12:121439400-121451800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr12:121439600-121451000	Strong transcription	Right Ventricle	heart
50	chr12:121439600-121451600	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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