Variant report

Variant	rs1154400
Chromosome Location	chr4:100010010-100010011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:403)
CpG islands
(count:183)
Chromatin interactive
region (count:20)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:403 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT1	chr4:100009688-100010451	GM12878	blood:	n/a	n/a
2	REST	chr4:100009565-100010330	HepG2	liver:	n/a	n/a
3	POLR2A	chr4:100009569-100010278	HCT-116	colon:	n/a	n/a
4	POLR2A	chr4:100009622-100010326	GM12891	blood:	n/a	n/a
5	POLR2A	chr4:100009487-100010457	GM12878	blood:	n/a	n/a
6	MAX	chr4:100009544-100010466	HepG2	liver:	n/a	n/a
7	POLR2A	chr4:100009342-100010774	H1-hESC	embryonic stem cell:	n/a	n/a
8	YY1	chr4:100009486-100010283	H1-hESC	embryonic stem cell:	n/a	chr4:100009843-100009855
9	JUND	chr4:100009956-100010105	H1-hESC	embryonic stem cell:	n/a	n/a
10	TAF1	chr4:100009345-100010312	H1-neurons	neurons:	n/a	n/a
11	TAF7	chr4:100009161-100010305	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr4:100009417-100010468	GM19193	blood:	n/a	n/a
13	POLR2A	chr4:100009460-100010561	GM12892	blood:	n/a	n/a
14	YY1	chr4:100009413-100010497	SK-N-SH	brain:	n/a	chr4:100009843-100009855
15	HA-E2F1	chr4:100009119-100010991	MCF-7	breast:	n/a	chr4:100009757-100009766
16	MAZ	chr4:100009016-100010655	IMR90	lung:	n/a	n/a
17	REST	chr4:100009626-100010144	SK-N-SH	brain:	n/a	n/a
18	MAX	chr4:100009601-100010299	MCF-7	breast:	n/a	n/a
19	HCFC1	chr4:100009675-100010573	K562	blood:	n/a	n/a
20	GABPA	chr4:100009708-100010240	K562	blood:	n/a	n/a
21	MBD4	chr4:100009827-100010400	HepG2	liver:	n/a	n/a
22	REST	chr4:100009915-100010298	SK-N-SH	brain:	n/a	n/a
23	POLR2A	chr4:100009353-100010502	MCF-7	breast:	n/a	n/a
24	JUN	chr4:100009427-100010419	K562	blood:	n/a	chr4:100009569-100009578
25	GTF2F1	chr4:100009700-100010216	K562	blood:	n/a	n/a
26	POLR2A	chr4:100009187-100010796	H1-hESC	embryonic stem cell:	n/a	n/a
27	FOXM1	chr4:100009615-100010257	GM12878	blood:	n/a	n/a
28	GABPA	chr4:100009625-100010471	SK-N-SH	brain:	n/a	n/a
29	POLR2A	chr4:100009618-100010364	GM15510	blood:	n/a	n/a
30	POLR2A	chr4:100009689-100010394	HepG2	liver:	n/a	n/a
31	TAF1	chr4:100009300-100010440	K562	blood:	n/a	n/a
32	GABPA	chr4:100009627-100010176	K562	blood:	n/a	n/a
33	POLR2A	chr4:100009343-100010422	Hela-S3	cervix:	n/a	n/a
34	TAF1	chr4:100009612-100010204	GM12891	blood:	n/a	n/a
35	TCF12	chr4:100009458-100010650	A549	lung:	n/a	n/a
36	POLR2A	chr4:100009578-100010185	A549	lung:	n/a	n/a
37	BCLAF1	chr4:100009910-100010481	GM12878	blood:	n/a	n/a
38	NFIC	chr4:100009889-100010341	HepG2	liver:	n/a	n/a
39	TBP	chr4:100009240-100010666	GM12878	blood:	n/a	n/a
40	EP300	chr4:100009810-100010046	SK-N-SH_RA	brain:	n/a	n/a
41	MAX	chr4:100009658-100010395	GM12878	blood:	n/a	n/a
42	PAX5	chr4:100009647-100010186	GM12878	blood:	n/a	n/a
43	POLR2A	chr4:100009211-100010921	HepG2	liver:	n/a	n/a
44	POLR2A	chr4:100009606-100010156	HepG2	liver:	n/a	n/a
45	TCF3	chr4:100009967-100010157	GM12878	blood:	n/a	n/a
46	MAX	chr4:100009654-100010189	K562	blood:	n/a	n/a
47	MYC	chr4:100009954-100010090	K562	blood:	n/a	n/a
48	E2F6	chr4:100009715-100010125	K562	blood:	n/a	chr4:100009757-100009766
49	CHD2	chr4:100009156-100010218	Hela-S3	cervix:	n/a	n/a
50	YY1	chr4:100009456-100010257	SK-N-SH	brain:	n/a	chr4:100009843-100009855

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:100010005-100010055	RPTEC	kidney:	n/a
2	chr4:100009986-100010036	RPTEC	kidney:	n/a
3	chr4:100009986-100010036	HCT-116	colon:	n/a
4	chr4:100010005-100010055	NT2-D1	testis:	n/a
5	chr4:100009986-100010036	GM12891	blood:	n/a
6	chr4:100009993-100010043	RPTEC	kidney:	n/a
7	chr4:100009993-100010043	K562	blood:	n/a
8	chr4:100009986-100010036	AG04449	skin:	fetal
9	chr4:100010005-100010055	T-47D	breast:	n/a
10	chr4:100009986-100010036	HNPCEpiC	eye:	n/a
11	chr4:100009986-100010036	NB4	blood:	n/a
12	chr4:100010005-100010055	MCF10A-Er-Src	breast:	n/a
13	chr4:100010005-100010055	HEEpiC	esophagus:	n/a
14	chr4:100009993-100010043	MCF-7	breast:	n/a
15	chr4:100009993-100010043	HRCEpiC	kidney:	n/a
16	chr4:100009993-100010043	AG09319	gingival:	n/a
17	chr4:100009986-100010036	BE2_C	brain:	n/a
18	chr4:100009993-100010043	HCF	heart:	n/a
19	chr4:100010005-100010055	AG09319	gingival:	n/a
20	chr4:100009986-100010036	HCPEpiC	choroid plexus:	n/a
21	chr4:100009986-100010036	ProgFib	skin:	n/a
22	chr4:100010005-100010055	ECC-1	luminal epithelium:	n/a
23	chr4:100009993-100010043	U87	brain:	n/a
24	chr4:100009986-100010036	SAEC	small airway:	n/a
25	chr4:100009993-100010043	HCPEpiC	choroid plexus:	n/a
26	chr4:100010005-100010055	ovcar-3	ovarian:	n/a
27	chr4:100009986-100010036	H1-hESC	embryonic stem cell:	embryo
28	chr4:100010005-100010055	MCF-7	breast:	n/a
29	chr4:100010005-100010055	Hela-S3	cervix:	n/a
30	chr4:100009993-100010043	AG04449	skin:	fetal
31	chr4:100010005-100010055	ProgFib	skin:	n/a
32	chr4:100009986-100010036	HCM	heart:	n/a
33	chr4:100009993-100010043	GM12891	blood:	n/a
34	chr4:100009993-100010043	SAEC	small airway:	n/a
35	chr4:100009993-100010043	SK-N-SH_RA	brain:	n/a
36	chr4:100010005-100010055	SKMC	muscle:	n/a
37	chr4:100010005-100010055	AoSMC	blood vessel:	n/a
38	chr4:100010005-100010055	HRPEpiC	eye:	n/a
39	chr4:100009986-100010036	IMR90	lung:	fetal
40	chr4:100009986-100010036	LNCaP	prostate:	n/a
41	chr4:100009993-100010043	HUVEC	blood vessel:	n/a
42	chr4:100009986-100010036	HRCEpiC	kidney:	n/a
43	chr4:100009986-100010036	Hela-S3	cervix:	n/a
44	chr4:100010005-100010055	HCM	heart:	n/a
45	chr4:100009986-100010036	HL-60	blood:	n/a
46	chr4:100009986-100010036	GM12892	blood:	n/a
47	chr4:100010005-100010055	Jurkat	blood:	n/a
48	chr4:100010005-100010055	K562	blood:	n/a
49	chr4:100009986-100010036	PrEC	prostate:	n/a
50	chr4:100010005-100010055	BE2_C	brain:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:100008381..100011330-chr4:100056699..100058939,2	MCF-7	breast:
2	chr2:64068314..64068983-chr4:100009769..100010303,2	NB4	blood:
3	chr4:99987489..99989654-chr4:100009071..100011507,2	MCF-7	breast:
4	chr4:99914937..99918533-chr4:100007922..100010203,4	K562	blood:
5	chr4:100009622..100010292-chr7:30634153..30635050,2	Hela-S3	cervix:
6	chr12:7052144..7053435-chr4:100009518..100010498,3	Hela-S3	cervix:
7	chr4:99951373..99953005-chr4:100007401..100010388,2	MCF-7	breast:
8	chr4:99915265..99918330-chr4:100008518..100010769,3	K562	blood:
9	chr4:99915764..99917972-chr4:100008352..100010409,2	MCF-7	breast:
10	chr4:100009539..100010373-chrX:41193722..41194435,2	Hela-S3	cervix:
11	chr16:31191097..31191842-chr4:100009488..100010016,2	Hela-S3	cervix:
12	chr4:99915328..99918402-chr4:100008331..100011431,5	MCF-7	breast:
13	chr4:100008800..100012914-chr4:100866380..100869813,4	K562	blood:
14	chr4:99849612..99852371-chr4:100007085..100010224,5	K562	blood:
15	chr4:99848192..99852255-chr4:100007586..100012546,7	K562	blood:
16	chr11:65189876..65190596-chr4:100009207..100010180,2	HCT-116	colon:
17	chr4:99849574..99853806-chr4:100008192..100011466,4	MCF-7	breast:
18	chr4:100008800..100013313-chr4:100866380..100869813,5	K562	blood:
19	chr4:100009534..100010241-chr4:100870932..100871664,2	NB4	blood:
20	chr4:100009648..100010295-chr6:136610384..136610985,2	Hela-S3	cervix:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-METAP1-3	chr4:100010008-100010435	ENSG00000246090

No data

Variant related genes	Relation type
ENSG00000246090	TF binding region
ADH5	TF binding region
ENSG00000246090	CpG island
ADH5	CpG island
ENSG00000164031	Chromatin interaction
ENSG00000263923	Chromatin interaction
ENSG00000215301	Chromatin interaction
ENSG00000029363	Chromatin interaction
ENSG00000198099	Chromatin interaction
ENSG00000272777	Chromatin interaction
ENSG00000238923	Chromatin interaction
ENSG00000106105	Chromatin interaction
ENSG00000089280	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000196295	Chromatin interaction
ENSG00000245322	Chromatin interaction
ENSG00000151247	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000169764	Chromatin interaction
ENSG00000111678	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000238449	Chromatin interaction

Extended variants
information (count: 128 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs10017466	0.83[MKK][hapmap]
rs1042364	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs1042365	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs1126672	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs1133485	0.86[AMR][1000 genomes]
rs1154401	0.92[CEU][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1154403	0.94[EUR][1000 genomes]
rs1154405	0.81[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1154406	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1154410	0.86[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1230155	0.84[ASW][hapmap];0.88[CEU][hapmap];0.87[GIH][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap]
rs12502237	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12506256	0.87[AMR][1000 genomes]
rs12697	0.84[ASW][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap]
rs13107558	0.80[EUR][1000 genomes]
rs13110176	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs13110764	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs13112176	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs1311615	0.81[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1311616	0.86[GIH][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1311617	0.81[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1311618	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1311619	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1311620	1.00[CEU][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13129488	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs13133647	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs13138294	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs13143133	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs1377689	0.81[CEU][hapmap];0.86[AMR][1000 genomes]
rs13832	0.91[CEU][hapmap]
rs1453872	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1453873	0.86[AMR][1000 genomes]
rs1453874	0.81[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes]
rs17217949	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17218003	0.84[CEU][hapmap]
rs17218073	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17218108	0.84[CEU][hapmap]
rs17218141	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17218162	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17218239	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17218288	0.84[CEU][hapmap]
rs17218560	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17218602	0.83[CEU][hapmap]
rs17817359	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17817868	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs17817958	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs1840228	0.86[AMR][1000 genomes]
rs1840229	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1840230	0.86[AMR][1000 genomes]
rs1840231	0.83[AMR][1000 genomes]
rs1901922	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1984362	0.81[CEU][hapmap]
rs1984364	0.81[CEU][hapmap]
rs2034696	0.86[AMR][1000 genomes]
rs2602840	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2602841	0.85[EUR][1000 genomes]
rs2602845	0.86[AMR][1000 genomes]
rs2602846	0.86[AMR][1000 genomes]
rs2602847	0.81[AMR][1000 genomes]
rs2602851	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2602853	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2602854	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2602855	0.83[AMR][1000 genomes]
rs2602856	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2602857	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2602858	0.83[AMR][1000 genomes]
rs2602859	0.83[AMR][1000 genomes]
rs2602860	0.87[EUR][1000 genomes]
rs2602862	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2602875	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2602876	0.81[AMR][1000 genomes]
rs2602877	0.81[AMR][1000 genomes]
rs2602878	0.81[AMR][1000 genomes]
rs2602895	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2602896	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2851246	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2851247	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2851248	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs2851259	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2851263	0.83[AMR][1000 genomes]
rs2851265	0.83[AMR][1000 genomes]
rs2851267	0.83[AMR][1000 genomes]
rs2851268	0.83[AMR][1000 genomes]
rs2851269	0.83[AMR][1000 genomes]
rs2851270	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2851274	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2851277	0.95[CEU][hapmap];0.86[AMR][1000 genomes]
rs2851278	0.81[CEU][hapmap];0.86[AMR][1000 genomes]
rs2851279	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2851283	0.83[AMR][1000 genomes]
rs2851284	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2851285	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2851286	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28730602	0.82[AFR][1000 genomes]
rs28730632	0.81[AFR][1000 genomes]
rs29001203	0.84[CEU][hapmap];0.86[TSI][hapmap]
rs3018046	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3018047	0.81[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3018048	0.81[CEU][hapmap];0.86[GIH][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3100629	0.81[AMR][1000 genomes]
rs3100630	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3133152	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34936974	0.84[CEU][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap]
rs4235435	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4699700	0.83[YRI][hapmap];0.81[AFR][1000 genomes]
rs4699712	0.84[CEU][hapmap]
rs4699713	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs4699714	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs4699716	0.84[TSI][hapmap]
rs4699717	0.81[CEU][hapmap];0.86[GIH][hapmap];0.84[TSI][hapmap]
rs6822830	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6831225	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7434491	0.81[CEU][hapmap]
rs7669636	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs7669660	0.84[ASW][hapmap];0.83[LWK][hapmap];0.83[YRI][hapmap]
rs7670060	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs7670241	0.84[CEU][hapmap];0.86[GIH][hapmap];0.86[TSI][hapmap]
rs7683704	0.88[LWK][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes]
rs7689753	0.86[CEU][hapmap]
rs7694646	0.83[CEU][hapmap]
rs896992	0.88[CEU][hapmap]
rs9761048	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1002927	chr4:99952472-100148690	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1005446	chr4:99988287-100121669	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv537196	chr4:99988287-100121669	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1849572	chr4:100007243-100024396	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1154400	ADH5	cis	Whole Blood	GTEx
rs1154400	ADH5	cis	cerebellum	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100006600-100011400	Active TSS	Colonic Mucosa	Colon
2	chr4:100006600-100012400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:100006800-100012400	Active TSS	NHLF	lung
4	chr4:100007000-100011600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:100007000-100011600	Active TSS	Duodenum Mucosa	Duodenum
6	chr4:100007200-100010800	Active TSS	Rectal Mucosa Donor 31	rectum
7	chr4:100007200-100011000	Active TSS	Fetal Intestine Small	intestine
8	chr4:100007400-100012400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr4:100007400-100012600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr4:100007600-100011800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr4:100007600-100012200	Active TSS	ES-I3 Cell Line	embryonic stem cell
12	chr4:100007800-100010200	Active TSS	Liver	Liver
13	chr4:100007800-100010800	Active TSS	Hela-S3	cervix
14	chr4:100007800-100011000	Active TSS	A549	lung
15	chr4:100007800-100011200	Active TSS	Muscle Satellite Cultured Cells	--
16	chr4:100007800-100012200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:100007800-100013400	Active TSS	K562	blood
18	chr4:100008000-100012400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:100008200-100010200	Active TSS	Placenta	Placenta
20	chr4:100008200-100011000	Active TSS	HSMM	muscle
21	chr4:100008200-100011400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
22	chr4:100008200-100011400	Active TSS	H9 Cell Line	embryonic stem cell
23	chr4:100008200-100011400	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr4:100008200-100011600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:100008200-100011600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr4:100008400-100010800	Active TSS	iPS-18 Cell Line	embryonic stem cell
27	chr4:100008400-100011000	Active TSS	H1 Cell Line	embryonic stem cell
28	chr4:100008400-100011000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr4:100008400-100011200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:100008400-100011200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:100008400-100011200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:100008400-100011600	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr4:100008400-100011600	Active TSS	NHDF-Ad	bronchial
34	chr4:100008400-100011800	Active TSS	NHEK	skin
35	chr4:100008400-100012200	Active TSS	Brain Germinal Matrix	brain
36	chr4:100008400-100012400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:100008400-100012400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:100008600-100010800	Active TSS	Brain Cingulate Gyrus	brain
39	chr4:100008600-100010800	Active TSS	Pancreas	Pancrea
40	chr4:100008600-100010800	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr4:100008600-100010800	Active TSS	Thymus	Thymus
42	chr4:100008600-100010800	Active TSS	HUVEC	blood vessel
43	chr4:100008600-100011000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:100008600-100011000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr4:100008600-100011000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr4:100008600-100011000	Active TSS	Fetal Intestine Large	intestine
47	chr4:100008600-100011400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr4:100008600-100011400	Active TSS	Fetal Kidney	kidney
49	chr4:100008600-100011400	Active TSS	GM12878-XiMat	blood
50	chr4:100008600-100011800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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