Variant report

Variant	rs11549487
Chromosome Location	chr3:56707689-56707690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56705021..56708606-chr3:56714722..56718211,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11926770	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491170	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs282535	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4299454	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59285806	1.00[EUR][1000 genomes]
rs6796679	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7611516	1.00[AFR][1000 genomes]
rs7619518	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621290	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630094	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7635349	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311608	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9860455	1.00[AFR][1000 genomes]
rs9879536	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
4	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:56664800-56711000	Strong transcription	Dnd41	blood
6	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:56684400-56715200	Weak transcription	Fetal Heart	heart
10	chr3:56684800-56707800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:56687600-56708200	Strong transcription	Hela-S3	cervix
12	chr3:56687800-56708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:56689000-56708200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:56690800-56707800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:56691000-56708000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr3:56691200-56708000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:56692200-56707800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:56693800-56707800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr3:56694400-56708800	Weak transcription	Right Ventricle	heart
20	chr3:56695400-56716000	Weak transcription	Fetal Brain Male	brain
21	chr3:56695600-56711400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr3:56695600-56715600	Weak transcription	Stomach Mucosa	stomach
23	chr3:56697800-56708000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr3:56698200-56708000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr3:56699600-56716000	Weak transcription	Fetal Kidney	kidney
26	chr3:56699600-56716200	Weak transcription	Spleen	Spleen
27	chr3:56699800-56716000	Weak transcription	Aorta	Aorta
28	chr3:56701800-56716000	Weak transcription	Psoas Muscle	Psoas
29	chr3:56702400-56715400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr3:56702400-56716200	Weak transcription	Small Intestine	intestine
31	chr3:56702600-56708200	Strong transcription	GM12878-XiMat	blood
32	chr3:56702600-56710000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr3:56702600-56715800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr3:56702600-56716000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr3:56702600-56716000	Weak transcription	Colonic Mucosa	Colon
36	chr3:56702800-56712800	Weak transcription	Fetal Brain Female	brain
37	chr3:56702800-56713400	Weak transcription	Brain Substantia Nigra	brain
38	chr3:56702800-56715800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:56703000-56716200	Weak transcription	Ovary	ovary
40	chr3:56703200-56716000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr3:56703400-56713600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:56703600-56715400	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:56704000-56709800	Weak transcription	K562	blood
44	chr3:56704000-56713200	Weak transcription	Colon Smooth Muscle	Colon
45	chr3:56704000-56714200	Weak transcription	NHLF	lung
46	chr3:56704600-56713400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr3:56704600-56714200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr3:56704800-56708000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr3:56704800-56711600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr3:56704800-56714200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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