Variant report

Variant	rs4299454
Chromosome Location	chr3:56694200-56694201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56685409..56688406-chr3:56693348..56695126,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11549487	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11926770	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1491170	0.87[AMR][1000 genomes]
rs282535	0.87[AMR][1000 genomes]
rs6796679	0.87[AMR][1000 genomes]
rs7611516	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7619518	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7621290	0.87[AMR][1000 genomes]
rs7630094	0.87[AMR][1000 genomes]
rs7635349	0.87[AMR][1000 genomes]
rs7637301	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9311608	0.87[AMR][1000 genomes]
rs9860455	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs9879536	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
7	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
9	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
11	chr3:56664800-56711000	Strong transcription	Dnd41	blood
12	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr3:56668000-56707200	Strong transcription	Placenta	Placenta
17	chr3:56669600-56703800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:56675600-56702200	Weak transcription	K562	blood
19	chr3:56675800-56695200	Weak transcription	Gastric	stomach
20	chr3:56675800-56707000	Weak transcription	Esophagus	oesophagus
21	chr3:56675800-56716200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:56676000-56705600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr3:56677000-56696600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr3:56677200-56705400	Strong transcription	Primary T cells from cord blood	blood
25	chr3:56683600-56702200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:56684000-56705400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr3:56684400-56696000	Strong transcription	Fetal Muscle Leg	muscle
28	chr3:56684400-56698200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr3:56684400-56715200	Weak transcription	Fetal Heart	heart
30	chr3:56684800-56695800	Strong transcription	Fetal Lung	lung
31	chr3:56684800-56706200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr3:56684800-56707800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr3:56685000-56707200	Strong transcription	Osteobl	bone
34	chr3:56685400-56700000	Strong transcription	Fetal Stomach	stomach
35	chr3:56685400-56707400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr3:56687000-56705400	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr3:56687400-56696200	Strong transcription	Brain Hippocampus Middle	brain
38	chr3:56687600-56701400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr3:56687600-56704800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:56687600-56708200	Strong transcription	Hela-S3	cervix
41	chr3:56687800-56697000	Strong transcription	Primary B cells from peripheral blood	blood
42	chr3:56687800-56707200	Strong transcription	Fetal Intestine Large	intestine
43	chr3:56687800-56707400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:56687800-56707400	Strong transcription	Adipose Nuclei	Adipose
45	chr3:56687800-56708000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr3:56688200-56698200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr3:56688600-56695600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:56688600-56695600	Strong transcription	Fetal Brain Female	brain
49	chr3:56688600-56704600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr3:56688600-56706600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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