Variant report

Variant	rs7635349
Chromosome Location	chr3:56672670-56672671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:56672550-56673277	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:56667946..56670615-chr3:56672035..56673637,2	MCF-7	breast:
2	chr3:56666260..56668466-chr3:56670162..56673215,3	K562	blood:
3	chr3:56672511..56675484-chr3:56675604..56678156,3	K562	blood:

Variant related genes	Relation type
FAM208A	TF binding region
ENSG00000163946	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11130525	0.81[LWK][hapmap];0.84[YRI][hapmap]
rs11130526	0.84[YRI][hapmap]
rs11549487	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11926770	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1491170	1.00[ASW][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs282535	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4299454	0.87[AMR][1000 genomes]
rs4974219	0.87[AMR][1000 genomes]
rs59285806	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6796679	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7611516	1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs7619518	1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7621290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7630094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637301	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9311608	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9860455	1.00[MEX][hapmap];0.82[MKK][hapmap]
rs9879536	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56640800-56695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:56642800-56713400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:56644400-56686400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:56644800-56708200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr3:56645400-56705200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:56646800-56673600	Weak transcription	Right Ventricle	heart
7	chr3:56647400-56707400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr3:56647400-56707800	Strong transcription	Fetal Thymus	thymus
9	chr3:56651400-56702000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:56652800-56701400	Weak transcription	Psoas Muscle	Psoas
11	chr3:56656200-56683000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:56657400-56683800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:56657600-56675800	Strong transcription	Fetal Muscle Leg	muscle
14	chr3:56657800-56678000	Weak transcription	Fetal Brain Male	brain
15	chr3:56659000-56673000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr3:56659400-56676200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr3:56661400-56710600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:56661800-56674800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr3:56662200-56672800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr3:56662400-56672800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr3:56664000-56688000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:56664000-56694800	Weak transcription	Stomach Mucosa	stomach
23	chr3:56664800-56687400	Strong transcription	Primary B cells from peripheral blood	blood
24	chr3:56664800-56711000	Strong transcription	Dnd41	blood
25	chr3:56665000-56687800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr3:56665000-56690400	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr3:56665000-56707800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr3:56665200-56686600	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr3:56665200-56691800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr3:56665200-56698800	Strong transcription	Primary T cells fromperipheralblood	blood
31	chr3:56665200-56707200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:56665400-56675200	Weak transcription	Pancreas	Pancrea
33	chr3:56665400-56683200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr3:56665400-56687000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr3:56665600-56676200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr3:56665800-56687400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:56665800-56687400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr3:56666000-56675800	Strong transcription	Primary T cells from cord blood	blood
39	chr3:56666000-56686800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr3:56666200-56708000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr3:56666600-56675600	Strong transcription	Hela-S3	cervix
42	chr3:56666600-56676600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:56666800-56675800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr3:56666800-56675800	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr3:56667000-56675200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr3:56667000-56684400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr3:56667600-56672800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr3:56668000-56673600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr3:56668000-56673600	Weak transcription	Colonic Mucosa	Colon
50	chr3:56668000-56673600	Weak transcription	Spleen	Spleen

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