Variant report

Variant	rs11556580
Chromosome Location	chr9:140084376-140084377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:61)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:140082786-140086626	Hela-S3	cervix:	n/a	n/a
2	SMC3	chr9:140082650-140084409	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr9:140084357-140084799	GM12892	blood:	n/a	n/a
4	POLR2A	chr9:140082535-140084540	HepG2	liver:	n/a	n/a
5	MTA3	chr9:140083879-140084388	GM12878	blood:	n/a	n/a
6	POLR2A	chr9:140084331-140084658	MCF-7	breast:	n/a	n/a
7	POLR2A	chr9:140084319-140084487	MCF-7	breast:	n/a	n/a
8	ESRRA	chr9:140082439-140084592	GM12878	blood:	n/a	chr9:140083845-140083864
9	CTCF	chr9:140084360-140084433	MCF-7	breast:	n/a	n/a
10	POLR2A	chr9:140082685-140084617	MCF-7	breast:	n/a	n/a
11	POLR2A	chr9:140084270-140084703	Hela-S3	cervix:	n/a	n/a
12	HCFC1	chr9:140081278-140085659	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr9:140082621-140084641	K562	blood:	n/a	n/a
14	MYC	chr9:140084330-140084426	MCF-7	breast:	n/a	n/a
15	POLR2A	chr9:140082736-140084612	ECC-1	luminal epithelium:	n/a	n/a
16	POLR2A	chr9:140082134-140087478	K562	blood:	n/a	n/a
17	ZNF263	chr9:140084358-140084500	HEK293-T-REx	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr9:140084348-140084398	HMEC	breast:	n/a
2	chr9:140084348-140084398	LNCaP	prostate:	n/a
3	chr9:140084348-140084398	HAEpiC	amniotic membrane:	n/a
4	chr9:140084348-140084398	RPTEC	kidney:	n/a
5	chr9:140084348-140084398	GM06990	blood:	n/a
6	chr9:140084348-140084398	HRCEpiC	kidney:	n/a
7	chr9:140084348-140084398	GM12892	blood:	n/a
8	chr9:140084348-140084398	NT2-D1	testis:	n/a
9	chr9:140084348-140084398	HPAEpiC	pulmonary alveolar:	n/a
10	chr9:140084348-140084398	K562	blood:	n/a
11	chr9:140084348-140084398	HCM	heart:	n/a
12	chr9:140084348-140084398	T-47D	breast:	n/a
13	chr9:140084348-140084398	SAEC	small airway:	n/a
14	chr9:140084348-140084398	AG09309	skin:	n/a
15	chr9:140084348-140084398	NH-A	brain:	n/a
16	chr9:140084348-140084398	BJ	skin:	n/a
17	chr9:140084348-140084398	AoSMC	blood vessel:	n/a
18	chr9:140084348-140084398	HCPEpiC	choroid plexus:	n/a
19	chr9:140084348-140084398	CMK	blood:	n/a
20	chr9:140084348-140084398	SK-N-SH	brain:	n/a
21	chr9:140084348-140084398	GM19239	blood:	n/a
22	chr9:140084348-140084398	HNPCEpiC	eye:	n/a
23	chr9:140084348-140084398	HIPEpiC	eye:	n/a
24	chr9:140084348-140084398	BE2_C	brain:	n/a
25	chr9:140084348-140084398	ovcar-3	ovarian:	n/a
26	chr9:140084348-140084398	U87	brain:	n/a
27	chr9:140084348-140084398	Caco-2	colon:	n/a
28	chr9:140084348-140084398	AG04449	skin:	fetal
29	chr9:140084348-140084398	HUVEC	blood vessel:	n/a
30	chr9:140084348-140084398	NHDF-neo	bronchial:	n/a
31	chr9:140084348-140084398	SK-N-MC	brain:	n/a
32	chr9:140084348-140084398	HRPEpiC	eye:	n/a
33	chr9:140084348-140084398	AG04450	lung:	fetal
34	chr9:140084348-140084398	AG09319	gingival:	n/a
35	chr9:140084348-140084398	Hela-S3	cervix:	n/a
36	chr9:140084348-140084398	HCF	heart:	n/a
37	chr9:140084348-140084398	GM12878	blood:	n/a
38	chr9:140084348-140084398	HepG2	liver:	n/a
39	chr9:140084348-140084398	PFSK-1	brain:	n/a
40	chr9:140084348-140084398	AG10803	skin:	n/a
41	chr9:140084348-140084398	SK-N-SH_RA	brain:	n/a
42	chr9:140084348-140084398	A549	lung:	n/a
43	chr9:140084348-140084398	HEK293	kidney:	embryo
44	chr9:140084348-140084398	HRE	kidney:	n/a
45	chr9:140084348-140084398	H1-hESC	embryonic stem cell:	embryo
46	chr9:140084348-140084398	IMR90	lung:	fetal
47	chr9:140084348-140084398	PANC-1	pancreas:	n/a
48	chr9:140084348-140084398	GM12891	blood:	n/a
49	chr9:140084348-140084398	HCT-116	colon:	n/a
50	chr9:140084348-140084398	PrEC	prostate:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:140081713..140085345-chr9:140445556..140447863,3	MCF-7	breast:
2	chr9:139978186..139981401-chr9:140080781..140084573,5	MCF-7	breast:
3	chr7:107998919..108001119-chr9:140083490..140085157,2	MCF-7	breast:
4	chr17:41464547..41466387-chr9:140081971..140084756,2	MCF-7	breast:
5	chr9:140009339..140013304-chr9:140084111..140087990,5	K562	blood:
6	chr9:139981733..139983238-chr9:140082865..140084671,2	MCF-7	breast:
7	chr9:140031706..140034425-chr9:140082208..140084978,2	MCF-7	breast:
8	chr17:41464365..41466547-chr9:140081990..140084990,5	K562	blood:
9	chr9:140006221..140009210-chr9:140083561..140085478,2	MCF-7	breast:
10	chr9:139999063..140001724-chr9:140081741..140084631,3	K562	blood:
11	chr9:140081774..140084608-chr9:140352899..140355217,2	MCF-7	breast:
12	chr9:139972633..139974495-chr9:140083281..140085094,2	MCF-7	breast:
13	chr9:139728444..139730258-chr9:140083252..140085801,2	K562	blood:
14	chr9:139621097..139622656-chr9:140082279..140085115,2	K562	blood:
15	chr9:140000224..140002864-chr9:140082360..140084569,2	K562	blood:

No data

Variant related genes	Relation type
ANAPC2	TF binding region
ANAPC2	CpG island
ENSG00000176978	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000197355	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000196642	Chromatin interaction
ENSG00000165802	Chromatin interaction
ENSG00000233016	Chromatin interaction
ENSG00000176884	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000182154	Chromatin interaction

Extended variants
information (count: 129 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1128395	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11549105	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11549106	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11556579	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11794633	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs13292648	1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.88[TSI][hapmap];0.95[ASN][1000 genomes]
rs28369482	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28451678	0.82[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]
rs28452292	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490558	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28544087	0.82[CEU][hapmap];0.85[GIH][hapmap];0.88[MEX][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes]
rs28560209	0.91[CEU][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs28649367	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28664164	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28665875	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087779	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35100258	0.91[EUR][1000 genomes]
rs35455131	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3922734	0.97[EUR][1000 genomes]
rs3922735	0.89[EUR][1000 genomes]
rs4074426	0.82[CEU][hapmap];0.88[TSI][hapmap]
rs55642373	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55728563	0.92[EUR][1000 genomes]
rs55956196	0.96[EUR][1000 genomes]
rs60073116	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61319460	1.00[ASN][1000 genomes]
rs66708191	0.84[EUR][1000 genomes]
rs66855886	0.83[EUR][1000 genomes]
rs67506437	0.82[EUR][1000 genomes]
rs72763284	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72763289	0.83[EUR][1000 genomes]
rs72763290	0.84[EUR][1000 genomes]
rs72763294	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73571568	0.88[EUR][1000 genomes]
rs9411252	0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs9411313	0.82[EUR][1000 genomes]
rs9775861	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
2	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
3	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
5	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
6	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
7	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
9	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
10	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
11	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
12	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
13	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
14	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
15	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
16	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
17	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
18	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
19	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
20	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
21	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
22	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
23	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
24	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
25	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
26	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
27	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
28	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
29	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
30	nsv894551	chr9:139879170-140118448	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	152 gene(s)	inside rSNPs	diseases
31	nsv894552	chr9:139879170-140135118	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
32	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
33	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
34	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
35	nsv894559	chr9:139906359-140094605	Strong transcription Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	106 gene(s)	inside rSNPs	diseases
36	nsv894560	chr9:139906359-140135118	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
37	nsv894561	chr9:139906359-140143801	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	252 gene(s)	inside rSNPs	diseases
38	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
39	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
40	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
41	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
42	esv2761561	chr9:139924637-140086045	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	95 gene(s)	inside rSNPs	diseases
43	nsv894569	chr9:139926402-140118448	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	123 gene(s)	inside rSNPs	diseases
44	nsv894571	chr9:139929435-140135118	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
45	nsv894572	chr9:139934020-140135118	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
46	nsv894573	chr9:139934020-140218978	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
47	nsv894578	chr9:139935853-140118448	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
48	nsv894579	chr9:139935853-140135118	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	153 gene(s)	inside rSNPs	diseases
49	nsv894582	chr9:139950351-140218978	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
50	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11556580	TPRN	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140081000-140085000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
2	chr9:140081800-140084400	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr9:140082200-140084400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr9:140082600-140084400	Active TSS	Gastric	stomach
5	chr9:140083200-140084400	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr9:140083600-140084400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:140083600-140084400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr9:140083600-140084400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr9:140083600-140084400	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr9:140083600-140084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:140083600-140084400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:140083600-140084400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:140083600-140084400	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr9:140083600-140084400	Flanking Active TSS	Liver	Liver
15	chr9:140083600-140084400	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr9:140083600-140084400	Flanking Active TSS	Duodenum Mucosa	Duodenum
17	chr9:140083600-140084400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr9:140083600-140084400	Flanking Active TSS	Rectal Smooth Muscle	rectum
19	chr9:140083600-140084400	Flanking Active TSS	Right Ventricle	heart
20	chr9:140083600-140084400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr9:140083600-140084600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:140083600-140084600	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr9:140083600-140084600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr9:140083800-140084400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
25	chr9:140083800-140084400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:140083800-140084400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
27	chr9:140083800-140084400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr9:140083800-140084400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr9:140083800-140084400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr9:140083800-140084400	Flanking Active TSS	Brain Cingulate Gyrus	brain
31	chr9:140083800-140084400	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr9:140083800-140084400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:140083800-140084400	Flanking Active TSS	Brain Substantia Nigra	brain
34	chr9:140083800-140084400	Flanking Active TSS	Colon Smooth Muscle	Colon
35	chr9:140083800-140084400	Flanking Active TSS	Esophagus	oesophagus
36	chr9:140083800-140084400	Flanking Active TSS	Fetal Lung	lung
37	chr9:140083800-140084400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
38	chr9:140083800-140084400	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr9:140083800-140084400	Flanking Active TSS	Thymus	Thymus
40	chr9:140083800-140084400	Flanking Active TSS	HMEC	breast
41	chr9:140083800-140084400	Flanking Active TSS	HUVEC	blood vessel
42	chr9:140083800-140084400	Flanking Active TSS	NHEK	skin
43	chr9:140083800-140084400	Flanking Active TSS	Osteobl	bone
44	chr9:140083800-140084600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:140083800-140084600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:140083800-140084600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:140083800-140084600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr9:140083800-140084600	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
49	chr9:140083800-140084600	Flanking Active TSS	Stomach Mucosa	stomach
50	chr9:140083800-140084600	Flanking Active TSS	NH-A	brain

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