Variant report

Variant	rs66708191
Chromosome Location	chr9:140095436-140095437
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF7	chr9:140094903-140095679	H1-hESC	embryonic stem cell:	n/a	n/a
2	ZKSCAN1	chr9:140095028-140095673	Hela-S3	cervix:	n/a	n/a
3	SPI1	chr9:140095355-140095741	HL-60	blood:	n/a	chr9:140095584-140095593
4	TBP	chr9:140094981-140095776	HepG2	liver:	n/a	n/a
5	POLR2A	chr9:140094920-140095843	GM12891	blood:	n/a	n/a
6	POLR2A	chr9:140094982-140096285	GM12878	blood:	n/a	n/a
7	POLR2A	chr9:140094912-140096418	GM12878	blood:	n/a	n/a
8	MYC	chr9:140094752-140095776	A549	lung:	n/a	n/a
9	POLR2A	chr9:140094589-140095787	A549	lung:	n/a	n/a
10	SIN3AK20	chr9:140094967-140095908	MCF-7	breast:	n/a	n/a
11	CTCF	chr9:140095340-140095590	HUVEC	blood vessel:	n/a	n/a
12	SIN3AK20	chr9:140095382-140095676	HepG2	liver:	n/a	n/a
13	SMARCB1	chr9:140094739-140096083	Hela-S3	cervix:	n/a	n/a
14	YY1	chr9:140094689-140095838	HepG2	liver:	n/a	chr9:140095173-140095184 chr9:140095529-140095543
15	RELA	chr9:140095112-140096029	GM18951	blood:	n/a	chr9:140095272-140095281 chr9:140095272-140095281
16	PBX3	chr9:140095333-140095512	GM12878	blood:	n/a	n/a
17	SIN3A	chr9:140094832-140095730	GM12878	blood:	n/a	chr9:140095505-140095514
18	SRF	chr9:140095102-140095728	MCF-7	breast:	n/a	n/a
19	HDAC2	chr9:140095385-140095660	K562	blood:	n/a	n/a
20	MAZ	chr9:140093713-140096374	IMR90	lung:	n/a	n/a
21	SP2	chr9:140095045-140095620	HepG2	liver:	n/a	chr9:140095319-140095334 chr9:140095284-140095299
22	SP1	chr9:140094976-140095735	GM12878	blood:	n/a	chr9:140095373-140095383 chr9:140095373-140095387 chr9:140095285-140095294 chr9:140095286-140095295 chr9:140095374-140095383 chr9:140095372-140095383 chr9:140095285-140095294 chr9:140095284-140095296 chr9:140095323-140095335 chr9:140095373-140095382 chr9:140095316-140095327 chr9:140095372-140095384
23	IRF1	chr9:140094884-140095698	K562	blood:	n/a	chr9:140095282-140095296
24	ESRRA	chr9:140094993-140095776	HepG2	liver:	n/a	chr9:140095563-140095575 chr9:140095564-140095580 chr9:140095558-140095571 chr9:140095564-140095580 chr9:140095559-140095575 chr9:140095563-140095573
25	GABPA	chr9:140095243-140095635	GM12878	blood:	n/a	n/a
26	GTF2B	chr9:140095048-140095570	K562	blood:	n/a	n/a
27	PAX5	chr9:140095260-140095643	GM12891	blood:	n/a	n/a
28	YY1	chr9:140095047-140095679	SK-N-SH	brain:	n/a	chr9:140095173-140095184 chr9:140095529-140095543
29	ELK1	chr9:140095092-140095687	GM12878	blood:	n/a	n/a
30	ELK4	chr9:140095310-140095596	HEK293	kidney:	n/a	chr9:140095483-140095494
31	TAF1	chr9:140094902-140095758	GM12878	blood:	n/a	n/a
32	MTA3	chr9:140095352-140096554	GM12878	blood:	n/a	n/a
33	POLR2A	chr9:140094958-140095796	HCT-116	colon:	n/a	n/a
34	GABPA	chr9:140095077-140095648	K562	blood:	n/a	n/a
35	POLR2A	chr9:140094689-140095773	H1-neurons	neurons:	n/a	n/a
36	MYC	chr9:140094807-140095982	K562	blood:	n/a	n/a
37	ZNF143	chr9:140095016-140095714	GM12878	blood:	n/a	n/a
38	CHD2	chr9:140095110-140095707	GM12878	blood:	n/a	chr9:140095284-140095294
39	POLR2A	chr9:140095135-140095891	U87	brain:	n/a	n/a
40	SPI1	chr9:140095187-140095821	HL-60	blood:	n/a	chr9:140095584-140095593
41	TAF1	chr9:140094641-140095818	HepG2	liver:	n/a	n/a
42	NR2F2	chr9:140095174-140095835	K562	blood:	n/a	n/a
43	POLR2A	chr9:140094939-140095792	PFSK-1	brain:	n/a	n/a
44	YY1	chr9:140094998-140095605	NT2-D1	testis:	n/a	chr9:140095173-140095184 chr9:140095529-140095543
45	SIX5	chr9:140095287-140095877	A549	lung:	n/a	n/a
46	MXI1	chr9:140094800-140095816	K562	blood:	n/a	n/a
47	ELF1	chr9:140095254-140095840	A549	lung:	n/a	chr9:140095486-140095495
48	TAF1	chr9:140095067-140095632	MCF-7	breast:	n/a	n/a
49	POLR2A	chr9:140094958-140095817	HepG2	liver:	n/a	n/a
50	GABPA	chr9:140094763-140095961	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:140007701..140010427-chr9:140093637..140097149,3	K562	blood:
2	chr9:140032807..140034832-chr9:140093798..140096242,2	K562	blood:
3	chr14:73524767..73525585-chr9:140095013..140095528,2	Hela-S3	cervix:
4	chr9:140094431..140096407-chr9:140348032..140350852,2	K562	blood:
5	chr9:139979838..139983602-chr9:140093093..140096607,4	MCF-7	breast:
6	chr9:139980141..139982079-chr9:140093355..140095855,3	MCF-7	breast:
7	chr11:62494226..62494959-chr9:140094950..140095844,2	Hela-S3	cervix:
8	chr20:57465617..57466366-chr9:140095078..140095859,2	Hela-S3	cervix:
9	chr9:140021998..140024128-chr9:140095396..140098354,2	K562	blood:
10	chr9:139920547..139923161-chr9:140094301..140096254,2	MCF-7	breast:
11	chr9:139961125..139967160-chr9:140089646..140096252,9	MCF-7	breast:
12	chr20:47895041..47895620-chr9:140095057..140095589,2	Hela-S3	cervix:
13	chr9:139690814..139693216-chr9:140094122..140096021,2	MCF-7	breast:
14	chr9:139962573..139965220-chr9:140094023..140096506,2	K562	blood:
15	chr9:139921431..139923652-chr9:140093860..140095528,2	K562	blood:

Variant related genes	Relation type
NDOR1	TF binding region
TPRN	TF binding region
ENSG00000176978	Chromatin interaction
ENSG00000214753	Chromatin interaction
ENSG00000107331	Chromatin interaction
ENSG00000180539	Chromatin interaction
ENSG00000177239	Chromatin interaction
ENSG00000209042	Chromatin interaction
ENSG00000165802	Chromatin interaction
ENSG00000213213	Chromatin interaction
ENSG00000177410	Chromatin interaction
ENSG00000087460	Chromatin interaction
ENSG00000119707	Chromatin interaction
ENSG00000234857	Chromatin interaction
ENSG00000268996	Chromatin interaction
ENSG00000176884	Chromatin interaction
ENSG00000186193	Chromatin interaction

Extended variants
information (count: 147 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1128395	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11549105	0.84[EUR][1000 genomes]
rs11549106	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11556579	0.86[EUR][1000 genomes]
rs11556580	0.84[EUR][1000 genomes]
rs11794633	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13288591	0.88[ASN][1000 genomes]
rs28369482	0.86[EUR][1000 genomes]
rs28451678	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28452292	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28490558	0.85[EUR][1000 genomes]
rs28544087	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28560209	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28649367	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28664164	0.85[EUR][1000 genomes]
rs28665875	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3087779	0.86[EUR][1000 genomes]
rs35100258	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35455131	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3922734	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3922735	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4074426	0.95[ASN][1000 genomes]
rs55642373	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55728563	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55956196	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60073116	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66855886	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67506437	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72763284	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72763289	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72763290	0.96[EUR][1000 genomes]
rs72763294	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73571568	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9411252	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9411313	0.82[EUR][1000 genomes]
rs9775861	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:111 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv540346	chr9:139360142-140164011	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	471 gene(s)	inside rSNPs	diseases
2	esv2422220	chr9:139478587-140244550	Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	454 gene(s)	inside rSNPs	diseases
3	nsv894442	chr9:139544437-140462099	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv894452	chr9:139598108-140523429	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
5	nsv894455	chr9:139607966-140411547	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	417 gene(s)	inside rSNPs	diseases
6	nsv894462	chr9:139683224-140274164	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	353 gene(s)	inside rSNPs	diseases
7	nsv894463	chr9:139683224-140411547	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
8	nsv524322	chr9:139690144-140376668	Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	371 gene(s)	inside rSNPs	diseases
9	nsv894469	chr9:139693992-140118448	Bivalent Enhancer Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	200 gene(s)	inside rSNPs	diseases
10	nsv894470	chr9:139693992-140339091	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
11	nsv894474	chr9:139694521-140432318	Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	374 gene(s)	inside rSNPs	diseases
12	nsv540352	chr9:139695108-140351178	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	358 gene(s)	inside rSNPs	diseases
13	nsv894484	chr9:139709976-140382705	Flanking Active TSS Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	360 gene(s)	inside rSNPs	diseases
14	nsv894485	chr9:139709976-140408904	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
15	nsv894486	chr9:139725120-140382705	Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	359 gene(s)	inside rSNPs	diseases
16	nsv894487	chr9:139725120-140449582	Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	363 gene(s)	inside rSNPs	diseases
17	esv1803771	chr9:139776400-140274255	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
18	nsv894498	chr9:139810595-140339091	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	324 gene(s)	inside rSNPs	diseases
19	nsv894499	chr9:139810595-140734161	Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
20	esv1822764	chr9:139822266-140202692	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
21	nsv894501	chr9:139823670-140400275	Genic enhancers Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
22	nsv894502	chr9:139823670-140487108	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
23	esv1823555	chr9:139834714-140362439	Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
24	nsv894506	chr9:139841512-140143801	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	278 gene(s)	inside rSNPs	diseases
25	nsv894519	chr9:139860631-140123584	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	161 gene(s)	inside rSNPs	diseases
26	nsv894520	chr9:139860631-140135118	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	185 gene(s)	inside rSNPs	diseases
27	nsv894521	chr9:139860631-140228092	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	308 gene(s)	inside rSNPs	diseases
28	nsv894522	chr9:139860631-140411547	Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
29	nsv894523	chr9:139860631-140462099	Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
30	nsv894551	chr9:139879170-140118448	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	152 gene(s)	inside rSNPs	diseases
31	nsv894552	chr9:139879170-140135118	Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	183 gene(s)	inside rSNPs	diseases
32	nsv894553	chr9:139879170-140318758	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
33	nsv894554	chr9:139879170-140339091	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	313 gene(s)	inside rSNPs	diseases
34	nsv894556	chr9:139904037-140408904	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
35	nsv894560	chr9:139906359-140135118	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
36	nsv894561	chr9:139906359-140143801	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	252 gene(s)	inside rSNPs	diseases
37	nsv894562	chr9:139906359-140382705	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	307 gene(s)	inside rSNPs	diseases
38	nsv894563	chr9:139906359-140408904	Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
39	nsv894564	chr9:139906359-140432318	Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
40	nsv1044451	chr9:139910406-140292556	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
41	nsv894569	chr9:139926402-140118448	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	123 gene(s)	inside rSNPs	diseases
42	nsv894571	chr9:139929435-140135118	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
43	nsv894572	chr9:139934020-140135118	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	154 gene(s)	inside rSNPs	diseases
44	nsv894573	chr9:139934020-140218978	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	279 gene(s)	inside rSNPs	diseases
45	nsv894578	chr9:139935853-140118448	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
46	nsv894579	chr9:139935853-140135118	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	153 gene(s)	inside rSNPs	diseases
47	nsv894582	chr9:139950351-140218978	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	276 gene(s)	inside rSNPs	diseases
48	nsv894583	chr9:139950351-140382705	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
49	nsv894584	chr9:139950351-140400275	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	298 gene(s)	inside rSNPs	diseases
50	nsv894585	chr9:139963091-140123584	Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	123 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:140091600-140095600	Active TSS	Sigmoid Colon	Sigmoid Colon
2	chr9:140092000-140096000	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:140092400-140095800	Active TSS	Gastric	stomach
4	chr9:140093400-140095600	Active TSS	Primary hematopoietic stem cells	blood
5	chr9:140093400-140095800	Active TSS	HepG2	liver
6	chr9:140093400-140096000	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr9:140093600-140095800	Active TSS	HSMMtube	muscle
8	chr9:140093600-140096200	Active TSS	HUES48 Cell Line	embryonic stem cell
9	chr9:140093600-140096200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr9:140093800-140095600	Active TSS	NHLF	lung
11	chr9:140093800-140096400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr9:140094000-140095600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:140094000-140095600	Active TSS	Pancreas	Pancrea
14	chr9:140094000-140095800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr9:140094000-140096000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:140094000-140096000	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr9:140094000-140096000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:140094200-140095600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:140094200-140095600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:140094200-140095600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr9:140094200-140095600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:140094200-140095600	Active TSS	Brain Anterior Caudate	brain
23	chr9:140094200-140095600	Active TSS	Brain Hippocampus Middle	brain
24	chr9:140094200-140095600	Active TSS	Duodenum Mucosa	Duodenum
25	chr9:140094200-140095600	Weak transcription	Fetal Heart	heart
26	chr9:140094200-140095600	Active TSS	Fetal Intestine Small	intestine
27	chr9:140094200-140095600	Active TSS	Placenta Amnion	Placenta Amnion
28	chr9:140094200-140095600	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr9:140094200-140095600	Active TSS	Hela-S3	cervix
30	chr9:140094200-140095600	Active TSS	HSMM	muscle
31	chr9:140094200-140095600	Active TSS	Osteobl	bone
32	chr9:140094200-140095800	Active TSS	Brain Cingulate Gyrus	brain
33	chr9:140094200-140095800	Active TSS	Colon Smooth Muscle	Colon
34	chr9:140094200-140095800	Active TSS	GM12878-XiMat	blood
35	chr9:140094200-140095800	Active TSS	NH-A	brain
36	chr9:140094200-140096000	Active TSS	H1 Cell Line	embryonic stem cell
37	chr9:140094200-140096000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr9:140094200-140096400	Active TSS	HUES64 Cell Line	embryonic stem cell
39	chr9:140094200-140096600	Active TSS	HUES6 Cell Line	embryonic stem cell
40	chr9:140094400-140095600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:140094400-140095600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:140094400-140095600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:140094400-140095600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:140094400-140095600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:140094400-140095600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:140094400-140095600	Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr9:140094400-140095600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:140094400-140095600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr9:140094400-140095600	Active TSS	Cortex derived primary cultured neurospheres	brain
50	chr9:140094400-140095600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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