Variant report

Variant	rs11559117
Chromosome Location	chr7:100076614-100076615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:233)
CpG islands
(count:61)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:233 , 50 per page) page: 1 2 3 4 5

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	UBTF	chr7:100075885-100077181	K562	blood:	n/a	n/a
2	TAF1	chr7:100076531-100077319	ECC-1	luminal epithelium:	n/a	n/a
3	HMGN3	chr7:100076178-100077151	K562	blood:	n/a	chr7:100076215-100076224
4	POLR2A	chr7:100076458-100077150	HUVEC	blood vessel:	n/a	n/a
5	FOXP2	chr7:100076613-100077094	PFSK-1	brain:	n/a	n/a
6	MAX	chr7:100076528-100077388	MCF-7	breast:	n/a	n/a
7	ZNF263	chr7:100076435-100077282	K562	blood:	n/a	chr7:100077126-100077135 chr7:100076908-100076929 chr7:100076884-100076905
8	POLR2A	chr7:100076606-100076963	GM12891	blood:	n/a	n/a
9	SIN3AK20	chr7:100076464-100077430	SK-N-SH	brain:	n/a	n/a
10	MAZ	chr7:100073553-100077555	IMR90	lung:	n/a	chr7:100074325-100074335 chr7:100076332-100076342
11	POLR2A	chr7:100076561-100077360	K562	blood:	n/a	n/a
12	KAP1	chr7:100076533-100077001	K562	blood:	n/a	n/a
13	MYC	chr7:100076587-100077145	K562	blood:	n/a	n/a
14	RCOR1	chr7:100076599-100077269	K562	blood:	n/a	n/a
15	STAT5A	chr7:100076599-100077112	K562	blood:	n/a	chr7:100076847-100076854
16	NFIC	chr7:100076517-100077349	ECC-1	luminal epithelium:	n/a	n/a
17	POLR2A	chr7:100076613-100076952	IMR90	lung:	n/a	n/a
18	ELF1	chr7:100074726-100077360	GM12878	blood:	n/a	n/a
19	POLR2A	chr7:100076430-100077454	PFSK-1	brain:	n/a	n/a
20	ELK1	chr7:100076457-100077024	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr7:100076426-100077465	GM12892	blood:	n/a	n/a
22	GABPA	chr7:100076491-100077258	K562	blood:	n/a	chr7:100077104-100077113
23	POLR2A	chr7:100076597-100076992	Hela-S3	cervix:	n/a	n/a
24	ZNF143	chr7:100076359-100077120	Hela-S3	cervix:	n/a	n/a
25	HDAC2	chr7:100076491-100077151	K562	blood:	n/a	n/a
26	POLR2A	chr7:100076503-100077399	H1-neurons	neurons:	n/a	n/a
27	POLR2A	chr7:100076512-100077404	SK-N-MC	brain:	n/a	n/a
28	REST	chr7:100076595-100077093	SK-N-SH	brain:	n/a	chr7:100076957-100076970
29	ZBTB7A	chr7:100076208-100077309	ECC-1	luminal epithelium:	n/a	chr7:100076222-100076230
30	MXI1	chr7:100075584-100077424	IMR90	lung:	n/a	chr7:100077301-100077316
31	PML	chr7:100076509-100077424	K562	blood:	n/a	n/a
32	RUNX3	chr7:100076548-100077162	GM12878	blood:	n/a	n/a
33	HEY1	chr7:100076535-100076991	K562	blood:	n/a	n/a
34	SPI1	chr7:100076591-100077215	HL-60	blood:	n/a	chr7:100077121-100077134
35	POLR2A	chr7:100076577-100077413	NB4	blood:	n/a	n/a
36	SIN3AK20	chr7:100075829-100077307	K562	blood:	n/a	n/a
37	GABPA	chr7:100076534-100077311	SK-N-SH	brain:	n/a	chr7:100077104-100077113
38	POLR2A	chr7:100076239-100077513	HepG2	liver:	n/a	n/a
39	POLR2A	chr7:100076577-100077404	HCT-116	colon:	n/a	n/a
40	POLR2A	chr7:100075955-100077304	GM12878	blood:	n/a	n/a
41	CEBPD	chr7:100076520-100077267	K562	blood:	n/a	n/a
42	REST	chr7:100076485-100077270	A549	lung:	n/a	chr7:100077101-100077114 chr7:100076957-100076970
43	POLR2A	chr7:100076604-100077345	K562	blood:	n/a	n/a
44	POLR2A	chr7:100076562-100077316	H1-neurons	neurons:	n/a	n/a
45	ELF1	chr7:100076340-100077409	MCF-7	breast:	n/a	n/a
46	POLR2A	chr7:100076070-100077172	HUVEC	blood vessel:	n/a	n/a
47	POLR2A	chr7:100076575-100077395	GM19099	blood:	n/a	n/a
48	ETS1	chr7:100076587-100077059	A549	lung:	n/a	chr7:100076845-100076859
49	TAF1	chr7:100076573-100077274	A549	lung:	n/a	n/a
50	MAX	chr7:100076446-100077318	GM12878	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:100076585-100076635	GM12892	blood:	n/a
2	chr7:100076585-100076635	NHDF-neo	bronchial:	n/a
3	chr7:100076585-100076635	HCM	heart:	n/a
4	chr7:100076585-100076635	CMK	blood:	n/a
5	chr7:100076585-100076635	HEK293	kidney:	embryo
6	chr7:100076585-100076635	Jurkat	blood:	n/a
7	chr7:100076585-100076635	SK-N-SH	brain:	n/a
8	chr7:100076585-100076635	HepG2	liver:	n/a
9	chr7:100076585-100076635	SK-N-SH_RA	brain:	n/a
10	chr7:100076585-100076635	HRE	kidney:	n/a
11	chr7:100076585-100076635	AoSMC	blood vessel:	n/a
12	chr7:100076585-100076635	GM12878	blood:	n/a
13	chr7:100076585-100076635	HUVEC	blood vessel:	n/a
14	chr7:100076585-100076635	SK-N-MC	brain:	n/a
15	chr7:100076585-100076635	GM19239	blood:	n/a
16	chr7:100076585-100076635	H1-hESC	embryonic stem cell:	embryo
17	chr7:100076585-100076635	NHBE	bronchial:	n/a
18	chr7:100076585-100076635	GM06990	blood:	n/a
19	chr7:100076585-100076635	PrEC	prostate:	n/a
20	chr7:100076585-100076635	GM12891	blood:	n/a
21	chr7:100076585-100076635	NH-A	brain:	n/a
22	chr7:100076585-100076635	ProgFib	skin:	n/a
23	chr7:100076585-100076635	AG10803	skin:	n/a
24	chr7:100076585-100076635	MCF-7	breast:	n/a
25	chr7:100076585-100076635	SKMC	muscle:	n/a
26	chr7:100076585-100076635	PFSK-1	brain:	n/a
27	chr7:100076585-100076635	T-47D	breast:	n/a
28	chr7:100076585-100076635	HCT-116	colon:	n/a
29	chr7:100076585-100076635	Caco-2	colon:	n/a
30	chr7:100076585-100076635	AG04450	lung:	fetal
31	chr7:100076585-100076635	HAEpiC	amniotic membrane:	n/a
32	chr7:100076585-100076635	RPTEC	kidney:	n/a
33	chr7:100076585-100076635	HIPEpiC	eye:	n/a
34	chr7:100076585-100076635	AG09319	gingival:	n/a
35	chr7:100076585-100076635	BE2_C	brain:	n/a
36	chr7:100076585-100076635	IMR90	lung:	fetal
37	chr7:100076585-100076635	U87	brain:	n/a
38	chr7:100076585-100076635	A549	lung:	n/a
39	chr7:100076585-100076635	PANC-1	pancreas:	n/a
40	chr7:100076585-100076635	HEEpiC	esophagus:	n/a
41	chr7:100076585-100076635	NB4	blood:	n/a
42	chr7:100076585-100076635	K562	blood:	n/a
43	chr7:100076585-100076635	HRCEpiC	kidney:	n/a
44	chr7:100076585-100076635	MCF10A-Er-Src	breast:	n/a
45	chr7:100076585-100076635	HCF	heart:	n/a
46	chr7:100076585-100076635	ECC-1	luminal epithelium:	n/a
47	chr7:100076585-100076635	Hela-S3	cervix:	n/a
48	chr7:100076585-100076635	HNPCEpiC	eye:	n/a
49	chr7:100076585-100076635	HCPEpiC	choroid plexus:	n/a
50	chr7:100076585-100076635	BJ	skin:	n/a

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:100074425..100078694-chr7:100079448..100083758,11	K562	blood:
2	chr7:100025583..100035841-chr7:100071553..100080023,19	MCF-7	breast:
3	chr7:100075297..100078487-chr7:100182577..100184592,4	MCF-7	breast:
4	chr7:100073820..100078843-chr7:100079329..100083762,6	MCF-7	breast:
5	chr7:100076505..100078117-chr7:100271085..100273455,2	K562	blood:
6	chr7:100075021..100078361-chr7:100180649..100185937,5	MCF-7	breast:
7	chr7:100075632..100078427-chr7:100182362..100185442,6	K562	blood:
8	chr7:100024700..100032514-chr7:100067180..100083143,31	K562	blood:
9	chr7:100076149..100078056-chr7:100145849..100148358,2	MCF-7	breast:
10	chr7:100022010..100030260-chr7:100068697..100082544,31	K562	blood:
11	chr7:100075509..100078207-chr7:100182258..100185575,5	K562	blood:
12	chr7:100073864..100076959-chr7:100134677..100138430,3	K562	blood:
13	chr7:100024981..100028086-chr7:100074705..100078040,4	MCF-7	breast:
14	chr7:100074273..100077650-chr7:100135969..100140252,4	MCF-7	breast:
15	chr7:100076419..100078761-chr7:100175635..100177478,2	K562	blood:

No data

Variant related genes	Relation type
TSC22D4	TF binding region
NYAP1	TF binding region
TSC22D4	CpG island
NYAP1	CpG island
ENSG00000172354	Chromatin interaction
ENSG00000166924	Chromatin interaction
ENSG00000266372	Chromatin interaction
ENSG00000240211	Chromatin interaction
ENSG00000241357	Chromatin interaction
ENSG00000160813	Chromatin interaction
ENSG00000077454	Chromatin interaction
ENSG00000106336	Chromatin interaction
ENSG00000106351	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 54 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1000215	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap]
rs10085549	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap]
rs10241492	1.00[CEU][hapmap]
rs1073	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs11760536	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11761253	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs11761426	0.85[CEU][hapmap]
rs11761624	1.00[ASN][1000 genomes]
rs11761725	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs11761784	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs11763414	1.00[CEU][hapmap]
rs11763511	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11764818	1.00[ASN][1000 genomes]
rs11765869	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs11766202	1.00[ASN][1000 genomes]
rs11766752	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769057	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs11769700	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769886	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs11771241	1.00[CEU][hapmap]
rs11771419	1.00[CEU][hapmap]
rs11772580	1.00[ASN][1000 genomes]
rs11773661	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962269	0.92[CEU][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406253	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406255	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs28490152	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap]
rs28578163	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap]
rs28629346	1.00[ASN][1000 genomes]
rs2897358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34989573	0.80[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111986	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs3900792	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap]
rs4074838	0.93[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs4385401	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4463351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469386	1.00[ASN][1000 genomes]
rs4472444	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4989959	1.00[ASN][1000 genomes]
rs60257855	1.00[ASN][1000 genomes]
rs60478351	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60644673	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60844404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66648318	1.00[ASN][1000 genomes]
rs66958101	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67040465	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67196635	1.00[ASN][1000 genomes]
rs67239991	1.00[ASN][1000 genomes]
rs67483801	1.00[ASN][1000 genomes]
rs67885733	1.00[ASN][1000 genomes]
rs6945952	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6946768	1.00[GIH][hapmap]
rs6948685	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6948699	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953107	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955362	1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955367	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs6962151	1.00[ASN][1000 genomes]
rs6965458	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6972167	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6974286	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975514	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975729	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs6978739	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979335	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979910	0.85[CEU][hapmap]
rs705866	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs73405353	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341507	0.85[CEU][hapmap]
rs7783159	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap]
rs7783550	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs7787620	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7787825	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792525	0.85[CEU][hapmap]
rs7792959	0.85[CEU][hapmap]
rs7794485	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800667	1.00[ASN][1000 genomes]
rs7809801	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811142	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases
4	nsv888776	chr7:100014711-100198386	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
5	nsv888777	chr7:100014711-100221867	Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
6	nsv888778	chr7:100014711-100236593	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
7	nsv888779	chr7:100014711-100313420	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	321 gene(s)	inside rSNPs	diseases
8	nsv888780	chr7:100032665-100198386	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
9	nsv984550	chr7:100034415-100080060	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv527050	chr7:100056166-100125975	Strong transcription Weak transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
11	nsv888781	chr7:100060928-100097895	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv888782	chr7:100064719-100236593	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
13	nsv888783	chr7:100073292-100136241	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv888784	chr7:100076614-100097895	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:54)

SNP	Gene	Cis/trans	Tissue	Source
rs11559117	PILRB	cis	cerebellum	SCAN
rs11559117	PILRB	cis	Thyroid	GTEx
rs11559117	PVRIG	cis	cerebellum	SCAN
rs11559117	STAG3L5P	cis	Adipose Subcutaneous	GTEx
rs11559117	PILRB	cis	Nerve Tibial	GTEx
rs11559117	STAG3L5P	cis	Muscle Skeletal	GTEx
rs11559117	PILRB	cis	Heart Left Ventricle	GTEx
rs11559117	PILRA	cis	Nerve Tibial	GTEx
rs11559117	STAG3L5P	cis	Nerve Tibial	GTEx
rs11559117	PVRIG	Cis_1M	lymphoblastoid	RTeQTL
rs11559117	PVRIG2P	cis	Thyroid	GTEx
rs11559117	PVRIG2P	cis	Esophagus Mucosa	GTEx
rs11559117	GNB2	cis	parietal	SCAN
rs11559117	PILRA	cis	Thyroid	GTEx
rs11559117	STAG3L5P	cis	Thyroid	GTEx
rs11559117	PMS2P1	cis	Thyroid	GTEx
rs11559117	PILRB	cis	parietal	SCAN
rs11559117	ZCWPW1	cis	Nerve Tibial	GTEx
rs11559117	PILRA	cis	Muscle Skeletal	GTEx
rs11559117	ZCWPW1	cis	cerebellum	SCAN
rs11559117	PVRIG2P	cis	Artery Tibial	GTEx
rs11559117	STAG3L5P	cis	Artery Tibial	GTEx
rs11559117	STAG3L5P	cis	Skin Sun Exposed Lower leg	GTEx
rs11559117	PILRB	cis	Whole Blood	GTEx
rs11559117	PILRB	cis	Artery Aorta	GTEx
rs11559117	STAG3L5P	cis	lung	GTEx
rs11559117	STAG3	cis	lymphoblastoid	seeQTL
rs11559117	PILRA	cis	Adipose Subcutaneous	GTEx
rs11559117	PILRB	cis	multi-tissue	Pritchard
rs11559117	STAG3L5P	cis	Heart Left Ventricle	GTEx
rs11559117	PILRB	cis	Adipose Subcutaneous	GTEx
rs11559117	PILRA	cis	Skin Sun Exposed Lower leg	GTEx
rs11559117	PILRB	cis	Muscle Skeletal	GTEx
rs11559117	PILRB	cis	Esophagus Mucosa	GTEx
rs11559117	PILRA	cis	parietal	SCAN
rs11559117	PILRB	cis	lung	GTEx
rs11559117	PILRA	cis	Esophagus Muscularis	GTEx
rs11559117	PILRA	cis	Esophagus Mucosa	GTEx
rs11559117	STAG3L5P	cis	Stomach	GTEx
rs11559117	PILRB	cis	Artery Tibial	GTEx
rs11559117	PVRIG2P	cis	lung	GTEx
rs11559117	PILRA	cis	cerebellum	SCAN
rs11559117	ZCWPW1	cis	parietal	SCAN
rs11559117	PILRA	cis	Artery Tibial	GTEx
rs11559117	STAG3L5P	cis	Esophagus Muscularis	GTEx
rs11559117	CNPY4	cis	cerebellum	SCAN
rs11559117	GATS	cis	parietal	SCAN
rs11559117	PILRA	cis	Artery Aorta	GTEx
rs11559117	PILRA	cis	Heart Left Ventricle	GTEx
rs11559117	STAG3L5P	cis	Esophagus Mucosa	GTEx
rs11559117	PILRB	cis	Esophagus Muscularis	GTEx
rs11559117	PILRB	Cis_1M	lymphoblastoid	RTeQTL
rs11559117	STAG3L5P	cis	Artery Aorta	GTEx
rs11559117	PILRB	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100073200-100076800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
2	chr7:100073400-100077000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
3	chr7:100074000-100077400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr7:100074600-100077200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:100074600-100077200	Active TSS	GM12878-XiMat	blood
6	chr7:100074800-100077200	Active TSS	HUES48 Cell Line	embryonic stem cell
7	chr7:100074800-100077200	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:100074800-100077200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr7:100074800-100077200	Active TSS	Rectal Smooth Muscle	rectum
10	chr7:100074800-100077400	Active TSS	HSMMtube	muscle
11	chr7:100075000-100077000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:100075000-100077000	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr7:100075000-100077000	Active TSS	NHDF-Ad	bronchial
14	chr7:100075000-100077000	Active TSS	NHLF	lung
15	chr7:100075000-100077200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:100075000-100077200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:100075000-100077200	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr7:100075000-100077200	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr7:100075000-100077200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:100075000-100077200	Active TSS	Muscle Satellite Cultured Cells	--
21	chr7:100075000-100077200	Active TSS	Colon Smooth Muscle	Colon
22	chr7:100075000-100077200	Active TSS	Fetal Lung	lung
23	chr7:100075000-100077200	Active TSS	Small Intestine	intestine
24	chr7:100075000-100077200	Active TSS	NH-A	brain
25	chr7:100075000-100077200	Active TSS	Osteobl	bone
26	chr7:100075000-100077400	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr7:100075000-100077400	Active TSS	HSMM	muscle
28	chr7:100075200-100076800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr7:100075200-100077000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr7:100075200-100077000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:100075200-100077000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr7:100075200-100077000	Active TSS	Brain Anterior Caudate	brain
33	chr7:100075200-100077000	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr7:100075200-100077000	Active TSS	Placenta Amnion	Placenta Amnion
35	chr7:100075200-100077000	Active TSS	Sigmoid Colon	Sigmoid Colon
36	chr7:100075200-100077000	Active TSS	Spleen	Spleen
37	chr7:100075200-100077000	Active TSS	HUVEC	blood vessel
38	chr7:100075200-100077200	Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr7:100075200-100077200	Active TSS	Primary T cells from cord blood	blood
40	chr7:100075200-100077200	Active TSS	Brain Angular Gyrus	brain
41	chr7:100075200-100077200	Active TSS	Brain Inferior Temporal Lobe	brain
42	chr7:100075200-100077200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:100075200-100077200	Active TSS	Brain Substantia Nigra	brain
44	chr7:100075200-100077200	Active TSS	Fetal Intestine Large	intestine
45	chr7:100075200-100077200	Active TSS	Gastric	stomach
46	chr7:100075200-100077200	Active TSS	Left Ventricle	heart
47	chr7:100075200-100077200	Active TSS	Ovary	ovary
48	chr7:100075200-100077200	Active TSS	Pancreas	Pancrea
49	chr7:100075200-100077200	Active TSS	Right Ventricle	heart
50	chr7:100075200-100077200	Active TSS	Skeletal Muscle Female	skeletal muscle

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