Variant report

Variant	rs6962151
Chromosome Location	chr7:100028484-100028485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:126)
CpG islands
(count:0)
Chromatin interactive
region (count:53)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:126 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:100025751-100028631	GM12892	blood:	n/a	n/a
2	CTCF	chr7:100028481-100028497	GM12891	blood:	n/a	n/a
3	POLR2A	chr7:100025653-100032091	GM12878	blood:	n/a	n/a
4	GABPA	chr7:100025566-100028962	K562	blood:	n/a	chr7:100027409-100027420 chr7:100027319-100027333 chr7:100025940-100025954 chr7:100027322-100027331 chr7:100027322-100027336 chr7:100025940-100025951 chr7:100027409-100027423 chr7:100027322-100027333 chr7:100026924-100026933 chr7:100025940-100025949 chr7:100025942-100025951
5	NR2F2	chr7:100025392-100028801	K562	blood:	n/a	n/a
6	POLR2A	chr7:100025819-100028997	K562	blood:	n/a	n/a
7	POLR2A	chr7:100028270-100028758	H1-hESC	embryonic stem cell:	n/a	n/a
8	CUX1	chr7:100028212-100028678	K562	blood:	n/a	n/a
9	POLR2A	chr7:100025635-100029589	Hela-S3	cervix:	n/a	n/a
10	CEBPD	chr7:100025553-100028942	K562	blood:	n/a	n/a
11	SIN3AK20	chr7:100025402-100028703	MCF-7	breast:	n/a	n/a
12	POLR2A	chr7:100025802-100028743	K562	blood:	n/a	n/a
13	POLR2A	chr7:100025733-100028891	K562	blood:	n/a	n/a
14	POLR2A	chr7:100025666-100029201	K562	blood:	n/a	n/a
15	POLR2A	chr7:100025712-100031084	GM12891	blood:	n/a	n/a
16	PML	chr7:100025465-100028661	GM12878	blood:	n/a	n/a
17	POLR2A	chr7:100025716-100029749	ECC-1	luminal epithelium:	n/a	n/a
18	TBP	chr7:100028081-100028500	GM12878	blood:	n/a	n/a
19	HEY1	chr7:100025717-100029222	K562	blood:	n/a	chr7:100026064-100026079
20	HEY1	chr7:100025622-100028869	K562	blood:	n/a	chr7:100026064-100026079
21	TEAD4	chr7:100027718-100028962	K562	blood:	n/a	n/a
22	POLR2A	chr7:100025699-100029296	GM12878	blood:	n/a	n/a
23	POLR2A	chr7:100025600-100028679	MCF-7	breast:	n/a	n/a
24	POLR2A	chr7:100028023-100028510	GM12891	blood:	n/a	n/a
25	FOXM1	chr7:100025659-100028527	GM12878	blood:	n/a	n/a
26	POLR2A	chr7:100028366-100028666	A549	lung:	n/a	n/a
27	POLR2A	chr7:100025711-100028599	Raji	blood:	n/a	n/a
28	POLR2A	chr7:100025707-100028566	GM15510	blood:	n/a	n/a
29	ELF1	chr7:100025428-100028963	GM12878	blood:	n/a	chr7:100026064-100026076
30	POLR2A	chr7:100025594-100032122	HL-60	blood:	n/a	n/a
31	POLR2A	chr7:100025738-100029045	GM12891	blood:	n/a	n/a
32	POLR2A	chr7:100025718-100028740	GM19193	blood:	n/a	n/a
33	POLR2A	chr7:100025675-100029652	Hela-S3	cervix:	n/a	n/a
34	POLR2A	chr7:100025739-100028655	GM19099	blood:	n/a	n/a
35	POLR2A	chr7:100025840-100028607	GM12878	blood:	n/a	n/a
36	POLR2A	chr7:100025802-100028749	HepG2	liver:	n/a	n/a
37	POLR2A	chr7:100025726-100030177	GM12878	blood:	n/a	n/a
38	REST	chr7:100028346-100028525	K562	blood:	n/a	n/a
39	POLR2A	chr7:100028310-100028740	HepG2	liver:	n/a	n/a
40	POLR2A	chr7:100028367-100028565	A549	lung:	n/a	n/a
41	POLR2A	chr7:100025632-100028541	SK-N-SH	brain:	n/a	n/a
42	POLR2A	chr7:100025552-100034611	GM12892	blood:	n/a	n/a
43	CTCF	chr7:100028400-100028550	GM12870	blood:	n/a	n/a
44	POLR2A	chr7:100025673-100032037	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr7:100025642-100028884	PFSK-1	brain:	n/a	n/a
46	POLR2A	chr7:100025520-100028569	HUVEC	blood vessel:	n/a	n/a
47	POLR2A	chr7:100025685-100034590	GM12892	blood:	n/a	n/a
48	WRNIP1	chr7:100028180-100028530	GM12878	blood:	n/a	n/a
49	TBP	chr7:100025681-100028508	K562	blood:	n/a	n/a
50	POLR2A	chr7:100025716-100034505	K562	blood:	n/a	n/a

No data

(count:53 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr7:100024810..100029555-chr7:100269638..100276218,15	K562	blood:
2	chr7:100026775..100029248-chr7:100181334..100183939,2	MCF-7	breast:
3	chr2:97534428..97535999-chr7:100026156..100028753,2	MCF-7	breast:
4	chr7:100027413..100031126-chr7:100286427..100288573,3	K562	blood:
5	chr7:100026299..100028984-chr7:100423719..100425446,2	MCF-7	breast:
6	chr7:100024854..100029212-chr7:100238393..100241596,5	K562	blood:
7	chr7:100024700..100032514-chr7:100067180..100083143,31	K562	blood:
8	chr7:100024644..100031194-chr7:100062394..100068680,9	K562	blood:
9	chr15:60690567..60692654-chr7:100025959..100028675,2	K562	blood:
10	chr10:18947486..18949622-chr7:100026064..100028896,2	MCF-7	breast:
11	chr7:99743864..99749368-chr7:100025322..100029105,6	K562	blood:
12	chr7:99677846..99681399-chr7:100025174..100029012,4	K562	blood:
13	chr20:46130232..46131816-chr7:100027827..100030271,2	MCF-7	breast:
14	chr7:100027524..100029226-chr7:100168230..100171158,2	K562	blood:
15	chr4:95405668..95407822-chr7:100027413..100029654,2	K562	blood:
16	chr7:100026330..100028591-chr7:100493941..100496922,3	K562	blood:
17	chr7:99949872..99952951-chr7:100026343..100028648,3	K562	blood:
18	chr7:99715745..99719819-chr7:100025787..100030155,6	K562	blood:
19	chr20:62150920..62153438-chr7:100025930..100028623,2	MCF-7	breast:
20	chr7:99697437..99703178-chr7:100024624..100029482,10	K562	blood:
21	chr7:100024823..100028490-chr7:100199635..100204792,9	MCF-7	breast:
22	chr7:100004091..100007847-chr7:100024893..100029911,8	MCF-7	breast:
23	chr7:100027510..100029319-chr7:100177728..100180602,2	MCF-7	breast:
24	chr7:100026802..100029460-chr7:100209697..100211823,3	MCF-7	breast:
25	chr7:99696789..99700792-chr7:100024893..100031468,10	K562	blood:
26	chr7:100025899..100028913-chr7:100286592..100288668,3	K562	blood:
27	chr7:100009832..100015861-chr7:100024427..100028524,9	MCF-7	breast:
28	chr7:99965641..99971124-chr7:100025245..100028820,5	MCF-7	breast:
29	chr7:100025163..100029050-chr7:100284721..100290800,5	MCF-7	breast:
30	chr7:100026476..100029538-chr7:100281569..100284775,3	K562	blood:
31	chr7:99998688..100005691-chr7:100025198..100032529,13	K562	blood:
32	chr7:100027673..100031185-chr7:100064421..100066672,3	K562	blood:
33	chr7:99756236..99758894-chr7:100025899..100028598,2	K562	blood:
34	chr7:100025040..100028858-chr7:100198464..100203953,10	K562	blood:
35	chr7:100025028..100029218-chr7:100206824..100213289,7	K562	blood:
36	chr7:99515746..99518740-chr7:100026570..100028641,2	MCF-7	breast:
37	chr7:100025583..100035841-chr7:100071553..100080023,19	MCF-7	breast:
38	chr7:99723158..99726590-chr7:100025016..100029006,5	K562	blood:
39	chr7:99717030..99721378-chr7:100025256..100028946,7	MCF-7	breast:
40	chr7:100027421..100030245-chr7:100062292..100064622,2	MCF-7	breast:
41	chr7:99756015..99757870-chr7:100027547..100029146,2	MCF-7	breast:
42	chr7:99715831..99718860-chr7:100025422..100028791,5	K562	blood:
43	chr7:100026952..100029896-chr7:100807683..100810548,2	K562	blood:
44	chr7:100025315..100028678-chr7:100237515..100241293,6	K562	blood:
45	chr7:99746381..99748629-chr7:100026351..100029105,2	K562	blood:
46	chr7:100022010..100030260-chr7:100068697..100082544,31	K562	blood:
47	chr7:100024997..100029018-chr7:100182448..100185836,5	MCF-7	breast:
48	chr7:100024456..100030636-chr7:100180698..100187996,13	K562	blood:
49	chr7:100025714..100030196-chr7:100134897..100138793,5	K562	blood:
50	chr7:100027302..100029846-chr8:144819024..144821245,2	MCF-7	breast:

No data

Variant related genes	Relation type
ZCWPW1	TF binding region
ENSG00000241357	TF binding region
ENSG00000106330	Chromatin interaction
ENSG00000166508	Chromatin interaction
ENSG00000146830	Chromatin interaction
ENSG00000077454	Chromatin interaction
ENSG00000106351	Chromatin interaction
ENSG00000196411	Chromatin interaction
ENSG00000106327	Chromatin interaction
ENSG00000106336	Chromatin interaction
ENSG00000214309	Chromatin interaction
ENSG00000125534	Chromatin interaction
ENSG00000224729	Chromatin interaction
ENSG00000128564	Chromatin interaction
ENSG00000242798	Chromatin interaction
ENSG00000146833	Chromatin interaction
ENSG00000085514	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000106290	Chromatin interaction
ENSG00000146828	Chromatin interaction
ENSG00000166526	Chromatin interaction
ENSG00000235333	Chromatin interaction
ENSG00000165997	Chromatin interaction
ENSG00000182718	Chromatin interaction
ENSG00000152487	Chromatin interaction
ENSG00000221838	Chromatin interaction
ENSG00000121716	Chromatin interaction
ENSG00000266372	Chromatin interaction
ENSG00000166925	Chromatin interaction
ENSG00000106333	Chromatin interaction
ENSG00000166997	Chromatin interaction
ENSG00000146826	Chromatin interaction
ENSG00000124151	Chromatin interaction
ENSG00000087085	Chromatin interaction
ENSG00000166924	Chromatin interaction
ENSG00000172354	Chromatin interaction
ENSG00000188186	Chromatin interaction
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 45 )

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1000215	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1073	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11559117	1.00[ASN][1000 genomes]
rs11761624	1.00[ASN][1000 genomes]
rs11761725	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761784	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763414	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11763511	1.00[ASN][1000 genomes]
rs11764818	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766202	1.00[ASN][1000 genomes]
rs11766752	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769700	1.00[ASN][1000 genomes]
rs11769886	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11771241	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11771419	0.85[EUR][1000 genomes]
rs11772580	1.00[ASN][1000 genomes]
rs11773661	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962269	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003507	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2406253	1.00[ASN][1000 genomes]
rs2406255	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490152	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28578163	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28629346	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660238	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2897358	1.00[ASN][1000 genomes]
rs34989573	1.00[ASN][1000 genomes]
rs35111986	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3900792	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074838	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385401	1.00[ASN][1000 genomes]
rs4463351	1.00[ASN][1000 genomes]
rs4469386	1.00[ASN][1000 genomes]
rs4472444	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4989959	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60257855	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60478351	1.00[ASN][1000 genomes]
rs60644673	1.00[ASN][1000 genomes]
rs60844404	1.00[ASN][1000 genomes]
rs66632384	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66648318	1.00[ASN][1000 genomes]
rs66958101	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67040465	0.86[ASN][1000 genomes]
rs67163493	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67196635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67239991	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67315960	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67471932	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67483801	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67885733	1.00[ASN][1000 genomes]
rs68116612	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6948699	1.00[ASN][1000 genomes]
rs6953107	1.00[ASN][1000 genomes]
rs6953749	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6955362	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957928	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6967277	0.81[AMR][1000 genomes]
rs6970806	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970828	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6972167	0.86[ASN][1000 genomes]
rs6974286	1.00[ASN][1000 genomes]
rs6975514	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975729	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978739	1.00[ASN][1000 genomes]
rs6979335	1.00[ASN][1000 genomes]
rs73161759	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161762	0.99[EUR][1000 genomes]
rs73403312	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405353	1.00[ASN][1000 genomes]
rs7783159	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783550	0.85[EUR][1000 genomes]
rs7787620	1.00[ASN][1000 genomes]
rs7787825	1.00[ASN][1000 genomes]
rs7794485	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800667	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803454	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7809801	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811142	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases
4	nsv527107	chr7:100014711-100064719	Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
5	nsv888776	chr7:100014711-100198386	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
6	nsv888777	chr7:100014711-100221867	Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
7	nsv888778	chr7:100014711-100236593	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
8	nsv888779	chr7:100014711-100313420	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	321 gene(s)	inside rSNPs	diseases

mRNA abundance (count:45)

SNP	Gene	Cis/trans	Tissue	Source
rs6962151	STAG3L5P	cis	Thyroid	GTEx
rs6962151	PILRB	cis	Artery Aorta	GTEx
rs6962151	STAG3L5P	cis	Adipose Subcutaneous	GTEx
rs6962151	PILRB	cis	Muscle Skeletal	GTEx
rs6962151	PILRB	cis	Nerve Tibial	GTEx
rs6962151	PILRA	cis	Heart Left Ventricle	GTEx
rs6962151	PVRIG2P	cis	Esophagus Mucosa	GTEx
rs6962151	STAG3	Cis_1M	lymphoblastoid	RTeQTL
rs6962151	PILRA	cis	Artery Tibial	GTEx
rs6962151	STAG3L5P	cis	Artery Aorta	GTEx
rs6962151	PILRB	cis	Thyroid	GTEx
rs6962151	PVRIG2P	cis	Thyroid	GTEx
rs6962151	STAG3L5P	cis	Muscle Skeletal	GTEx
rs6962151	PVRIG2P	cis	Adipose Subcutaneous	GTEx
rs6962151	PILRA	cis	Artery Aorta	GTEx
rs6962151	PVRIG	Cis_1M	lymphoblastoid	RTeQTL
rs6962151	PILRB	cis	Whole Blood	GTEx
rs6962151	PILRB	cis	Skin Sun Exposed Lower leg	GTEx
rs6962151	ZCWPW1	cis	Nerve Tibial	GTEx
rs6962151	PVRIG2P	cis	lung	GTEx
rs6962151	PILRB	Cis_1M	lymphoblastoid	RTeQTL
rs6962151	STAG3L5P	cis	Esophagus Muscularis	GTEx
rs6962151	PVRIG2P	cis	Nerve Tibial	GTEx
rs6962151	PILRA	cis	Skin Sun Exposed Lower leg	GTEx
rs6962151	PILRA	cis	Esophagus Mucosa	GTEx
rs6962151	PILRB	cis	Artery Tibial	GTEx
rs6962151	STAG3L5P	cis	Nerve Tibial	GTEx
rs6962151	PILRB	cis	Heart Left Ventricle	GTEx
rs6962151	STAG3L5P	cis	Artery Tibial	GTEx
rs6962151	PILRA	cis	Esophagus Muscularis	GTEx
rs6962151	STAG3L5P	cis	Stomach	GTEx
rs6962151	PILRA	cis	Thyroid	GTEx
rs6962151	PILRB	cis	Esophagus Mucosa	GTEx
rs6962151	PILRA	cis	Muscle Skeletal	GTEx
rs6962151	PILRA	cis	Nerve Tibial	GTEx
rs6962151	PILRB	cis	Adipose Subcutaneous	GTEx
rs6962151	STAG3L5P	cis	Skin Sun Exposed Lower leg	GTEx
rs6962151	PILRA	cis	Adipose Subcutaneous	GTEx
rs6962151	PVRIG2P	cis	Artery Tibial	GTEx
rs6962151	STAG3L5P	cis	lung	GTEx
rs6962151	STAG3L5P	cis	Heart Left Ventricle	GTEx
rs6962151	PILRB	cis	multi-tissue	Pritchard
rs6962151	PILRB	cis	lung	GTEx
rs6962151	PILRB	cis	Esophagus Muscularis	GTEx
rs6962151	STAG3L5P	cis	Esophagus Mucosa	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100025400-100028600	Active TSS	Fetal Kidney	kidney
2	chr7:100025400-100028800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:100025600-100028600	Active TSS	NHLF	lung
4	chr7:100025600-100028800	Active TSS	H9 Cell Line	embryonic stem cell
5	chr7:100025800-100028600	Active TSS	iPS-15b Cell Line	embryonic stem cell
6	chr7:100025800-100028600	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr7:100025800-100028600	Active TSS	Psoas Muscle	Psoas
8	chr7:100025800-100028800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr7:100026000-100028600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:100026000-100028600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr7:100026000-100028600	Active TSS	Ovary	ovary
12	chr7:100026000-100028600	Active TSS	Sigmoid Colon	Sigmoid Colon
13	chr7:100026000-100028600	Active TSS	Small Intestine	intestine
14	chr7:100026000-100028800	Active TSS	Osteobl	bone
15	chr7:100026000-100029000	Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr7:100027200-100029400	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr7:100027200-100030000	Enhancers	Fetal Brain Male	brain
18	chr7:100027400-100028600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:100027400-100033600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:100028000-100028600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
21	chr7:100028000-100028600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr7:100028000-100028600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr7:100028000-100028600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
24	chr7:100028000-100028600	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr7:100028000-100028800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
26	chr7:100028000-100028800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
27	chr7:100028000-100028800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr7:100028000-100029000	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr7:100028000-100029000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr7:100028000-100029400	Flanking Active TSS	Hela-S3	cervix
31	chr7:100028200-100028600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:100028200-100028600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:100028200-100028600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
34	chr7:100028200-100028600	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr7:100028200-100028600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:100028200-100028600	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr7:100028200-100028600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr7:100028200-100028600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr7:100028200-100028600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr7:100028200-100028600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:100028200-100028600	Flanking Active TSS	Liver	Liver
42	chr7:100028200-100028600	Flanking Active TSS	Brain Germinal Matrix	brain
43	chr7:100028200-100028600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
44	chr7:100028200-100028600	Flanking Active TSS	Esophagus	oesophagus
45	chr7:100028200-100028600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
46	chr7:100028200-100028600	Flanking Active TSS	Fetal Muscle Trunk	muscle
47	chr7:100028200-100028600	Flanking Active TSS	Fetal Muscle Leg	muscle
48	chr7:100028200-100028600	Flanking Active TSS	Placenta	Placenta
49	chr7:100028200-100028600	Flanking Active TSS	Gastric	stomach
50	chr7:100028200-100028600	Flanking Active TSS	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links