Variant report

Variant	rs6975729
Chromosome Location	chr7:100028187-100028188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr7:100028092-100028354	K562	blood:	n/a	n/a
2	POLR2A	chr7:100025751-100028631	GM12892	blood:	n/a	n/a
3	POLR2A	chr7:100025653-100032091	GM12878	blood:	n/a	n/a
4	GABPA	chr7:100025566-100028962	K562	blood:	n/a	chr7:100027409-100027420 chr7:100027319-100027333 chr7:100025940-100025954 chr7:100027322-100027331 chr7:100027322-100027336 chr7:100025940-100025951 chr7:100027409-100027423 chr7:100027322-100027333 chr7:100026924-100026933 chr7:100025940-100025949 chr7:100025942-100025951
5	NR2F2	chr7:100025392-100028801	K562	blood:	n/a	n/a
6	BHLHE40	chr7:100025725-100028316	GM12878	blood:	n/a	chr7:100026063-100026079
7	POLR2A	chr7:100025819-100028997	K562	blood:	n/a	n/a
8	RCOR1	chr7:100025682-100028267	GM12878	blood:	n/a	n/a
9	ELK1	chr7:100027486-100028465	GM12878	blood:	n/a	n/a
10	MYC	chr7:100025681-100028419	K562	blood:	n/a	chr7:100027575-100027585 chr7:100026944-100026953
11	YY1	chr7:100026694-100028201	HepG2	liver:	n/a	chr7:100026924-100026933 chr7:100027646-100027658
12	MAX	chr7:100025321-100028257	HCT-116	colon:	n/a	chr7:100027575-100027585 chr7:100026944-100026953
13	IRF1	chr7:100025736-100028321	K562	blood:	n/a	chr7:100026838-100026852 chr7:100026923-100026937 chr7:100025758-100025769 chr7:100025806-100025820 chr7:100026818-100026832
14	POLR2A	chr7:100025635-100029589	Hela-S3	cervix:	n/a	n/a
15	CEBPD	chr7:100025553-100028942	K562	blood:	n/a	n/a
16	POLR2A	chr7:100025801-100028460	IMR90	lung:	n/a	n/a
17	MAX	chr7:100025597-100028390	NB4	blood:	n/a	chr7:100027575-100027585 chr7:100026944-100026953
18	SIN3AK20	chr7:100025402-100028703	MCF-7	breast:	n/a	n/a
19	POLR2A	chr7:100025802-100028743	K562	blood:	n/a	n/a
20	POLR2A	chr7:100025733-100028891	K562	blood:	n/a	n/a
21	POLR2A	chr7:100025666-100029201	K562	blood:	n/a	n/a
22	POLR2A	chr7:100025712-100031084	GM12891	blood:	n/a	n/a
23	PML	chr7:100025465-100028661	GM12878	blood:	n/a	n/a
24	POLR2A	chr7:100025716-100029749	ECC-1	luminal epithelium:	n/a	n/a
25	TBP	chr7:100028081-100028500	GM12878	blood:	n/a	n/a
26	EGR1	chr7:100025707-100028196	MCF-7	breast:	n/a	chr7:100027323-100027332 chr7:100026021-100026045 chr7:100027973-100027987 chr7:100026923-100026933 chr7:100027410-100027419 chr7:100026924-100026934 chr7:100025941-100025950 chr7:100027010-100027024 chr7:100027229-100027242 chr7:100026454-100026468
27	NFIC	chr7:100025574-100028406	GM12878	blood:	n/a	n/a
28	HEY1	chr7:100025717-100029222	K562	blood:	n/a	chr7:100026064-100026079
29	POLR2A	chr7:100025627-100028368	PANC-1	pancreas:	n/a	n/a
30	TBL1XR1	chr7:100025822-100028337	GM12878	blood:	n/a	n/a
31	ETS1	chr7:100027400-100028351	GM12878	blood:	n/a	n/a
32	MAX	chr7:100025422-100028282	MCF-7	breast:	n/a	chr7:100027575-100027585 chr7:100026944-100026953
33	HEY1	chr7:100025622-100028869	K562	blood:	n/a	chr7:100026064-100026079
34	TEAD4	chr7:100027718-100028962	K562	blood:	n/a	n/a
35	JUND	chr7:100025656-100028220	MCF-7	breast:	n/a	chr7:100026923-100026932
36	POLR2A	chr7:100025699-100029296	GM12878	blood:	n/a	n/a
37	POLR2A	chr7:100025600-100028679	MCF-7	breast:	n/a	n/a
38	MYC	chr7:100025659-100028206	A549	lung:	n/a	chr7:100027575-100027585 chr7:100026944-100026953
39	MAX	chr7:100025407-100028224	A549	lung:	n/a	chr7:100027575-100027585 chr7:100026944-100026953
40	MTA3	chr7:100028056-100028368	GM12878	blood:	n/a	n/a
41	POLR2A	chr7:100028023-100028510	GM12891	blood:	n/a	n/a
42	FOXM1	chr7:100025659-100028527	GM12878	blood:	n/a	n/a
43	PBX3	chr7:100025636-100028304	SK-N-SH	brain:	n/a	n/a
44	POLR2A	chr7:100025711-100028599	Raji	blood:	n/a	n/a
45	POLR2A	chr7:100025707-100028566	GM15510	blood:	n/a	n/a
46	HCFC1	chr7:100025709-100028201	K562	blood:	n/a	n/a
47	ELF1	chr7:100025428-100028963	GM12878	blood:	n/a	chr7:100026064-100026076
48	POLR2A	chr7:100025594-100032122	HL-60	blood:	n/a	n/a
49	NR2F2	chr7:100025565-100028227	MCF-7	breast:	n/a	n/a
50	SPI1	chr7:100028081-100028422	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:100024810..100029555-chr7:100269638..100276218,15	K562	blood:
2	chr7:100026775..100029248-chr7:100181334..100183939,2	MCF-7	breast:
3	chr2:97534428..97535999-chr7:100026156..100028753,2	MCF-7	breast:
4	chr7:99932595..99935080-chr7:100025979..100028387,3	K562	blood:
5	chr7:100027413..100031126-chr7:100286427..100288573,3	K562	blood:
6	chr7:100026299..100028984-chr7:100423719..100425446,2	MCF-7	breast:
7	chr7:100024854..100029212-chr7:100238393..100241596,5	K562	blood:
8	chr7:100024700..100032514-chr7:100067180..100083143,31	K562	blood:
9	chr7:100024644..100031194-chr7:100062394..100068680,9	K562	blood:
10	chr15:60690567..60692654-chr7:100025959..100028675,2	K562	blood:
11	chr10:18947486..18949622-chr7:100026064..100028896,2	MCF-7	breast:
12	chr7:99743864..99749368-chr7:100025322..100029105,6	K562	blood:
13	chr7:99677846..99681399-chr7:100025174..100029012,4	K562	blood:
14	chr20:46130232..46131816-chr7:100027827..100030271,2	MCF-7	breast:
15	chr7:100027524..100029226-chr7:100168230..100171158,2	K562	blood:
16	chr4:95405668..95407822-chr7:100027413..100029654,2	K562	blood:
17	chr6:20402241..20403876-chr7:100025950..100028229,2	K562	blood:
18	chr7:100026330..100028591-chr7:100493941..100496922,3	K562	blood:
19	chr7:99949872..99952951-chr7:100026343..100028648,3	K562	blood:
20	chr7:99715745..99719819-chr7:100025787..100030155,6	K562	blood:
21	chr20:62150920..62153438-chr7:100025930..100028623,2	MCF-7	breast:
22	chr7:99697437..99703178-chr7:100024624..100029482,10	K562	blood:
23	chr7:100026330..100028332-chr7:100493941..100495752,2	K562	blood:
24	chr7:100024823..100028490-chr7:100199635..100204792,9	MCF-7	breast:
25	chr7:100004091..100007847-chr7:100024893..100029911,8	MCF-7	breast:
26	chr7:100027510..100029319-chr7:100177728..100180602,2	MCF-7	breast:
27	chr7:100026802..100029460-chr7:100209697..100211823,3	MCF-7	breast:
28	chr7:99932349..99935076-chr7:100025979..100028387,3	K562	blood:
29	chr7:99696789..99700792-chr7:100024893..100031468,10	K562	blood:
30	chr7:100025899..100028913-chr7:100286592..100288668,3	K562	blood:
31	chr7:100009832..100015861-chr7:100024427..100028524,9	MCF-7	breast:
32	chr7:99965641..99971124-chr7:100025245..100028820,5	MCF-7	breast:
33	chr7:100025163..100029050-chr7:100284721..100290800,5	MCF-7	breast:
34	chr7:100024988..100028445-chr7:100180808..100186978,10	K562	blood:
35	chr7:100026476..100029538-chr7:100281569..100284775,3	K562	blood:
36	chr7:99998688..100005691-chr7:100025198..100032529,13	K562	blood:
37	chr7:100023646..100028399-chr7:100166149..100169452,5	K562	blood:
38	chr7:100027673..100031185-chr7:100064421..100066672,3	K562	blood:
39	chr7:99756236..99758894-chr7:100025899..100028598,2	K562	blood:
40	chr7:100025040..100028858-chr7:100198464..100203953,10	K562	blood:
41	chr7:100025028..100029218-chr7:100206824..100213289,7	K562	blood:
42	chr7:99515746..99518740-chr7:100026570..100028641,2	MCF-7	breast:
43	chr7:100025583..100035841-chr7:100071553..100080023,19	MCF-7	breast:
44	chr7:100025492..100028279-chr7:100180739..100182375,3	MCF-7	breast:
45	chr7:99723158..99726590-chr7:100025016..100029006,5	K562	blood:
46	chr7:100025401..100028370-chr7:100464359..100466273,3	K562	blood:
47	chr7:99717030..99721378-chr7:100025256..100028946,7	MCF-7	breast:
48	chr7:100027421..100030245-chr7:100062292..100064622,2	MCF-7	breast:
49	chr7:99756015..99757870-chr7:100027547..100029146,2	MCF-7	breast:
50	chr7:99723171..99726242-chr7:100025216..100028355,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241357	TF binding region
ZCWPW1	TF binding region
ENSG00000087077	Chromatin interaction
ENSG00000166924	Chromatin interaction
ENSG00000125534	Chromatin interaction
ENSG00000166508	Chromatin interaction
ENSG00000184414	Chromatin interaction
ENSG00000266372	Chromatin interaction
ENSG00000106327	Chromatin interaction
ENSG00000146828	Chromatin interaction
ENSG00000172354	Chromatin interaction
ENSG00000166526	Chromatin interaction
ENSG00000106333	Chromatin interaction
ENSG00000242798	Chromatin interaction
ENSG00000196411	Chromatin interaction
ENSG00000168758	Chromatin interaction
ENSG00000128564	Chromatin interaction
ENSG00000124151	Chromatin interaction
ENSG00000146826	Chromatin interaction
ENSG00000166925	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000165997	Chromatin interaction
ENSG00000146833	Chromatin interaction
ENSG00000188186	Chromatin interaction
ENSG00000085514	Chromatin interaction
ENSG00000106330	Chromatin interaction
ENSG00000166997	Chromatin interaction
ENSG00000235333	Chromatin interaction
ENSG00000146830	Chromatin interaction
ENSG00000182718	Chromatin interaction
ENSG00000242294	Chromatin interaction
ENSG00000224729	Chromatin interaction
ENSG00000106351	Chromatin interaction
ENSG00000112242	Chromatin interaction
ENSG00000106336	Chromatin interaction
ENSG00000221838	Chromatin interaction
ENSG00000272752	Chromatin interaction
ENSG00000087085	Chromatin interaction
ENSG00000077454	Chromatin interaction
ENSG00000121716	Chromatin interaction
ENSG00000152487	Chromatin interaction
ENSG00000106290	Chromatin interaction
ENSG00000214309	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 58 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1000215	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10085549	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs10241492	1.00[CEU][hapmap];0.93[YRI][hapmap]
rs1073	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11559117	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs11760536	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap]
rs11761253	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs11761426	0.85[CEU][hapmap]
rs11761624	1.00[ASN][1000 genomes]
rs11761725	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761784	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763414	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11763511	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs11764818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765869	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs11766202	1.00[ASN][1000 genomes]
rs11766752	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769057	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap]
rs11769700	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[ASN][1000 genomes]
rs11769886	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11771241	1.00[CEU][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11771419	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11772580	1.00[ASN][1000 genomes]
rs11773661	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962269	0.92[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003507	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2406253	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs2406255	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28490152	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28578163	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28629346	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660238	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2897358	1.00[ASN][1000 genomes]
rs34989573	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs35111986	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3900792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.85[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074838	1.00[ASW][hapmap];0.93[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4385401	1.00[ASN][1000 genomes]
rs4463351	1.00[ASN][1000 genomes]
rs4469386	1.00[ASN][1000 genomes]
rs4472444	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4989959	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60257855	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60478351	1.00[ASN][1000 genomes]
rs60644673	1.00[ASN][1000 genomes]
rs60844404	1.00[ASN][1000 genomes]
rs66632384	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66648318	1.00[ASN][1000 genomes]
rs66958101	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67040465	0.86[ASN][1000 genomes]
rs67163493	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67196635	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67239991	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67315960	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67471932	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67483801	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67885733	1.00[ASN][1000 genomes]
rs68116612	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945952	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.93[MKK][hapmap];0.93[YRI][hapmap]
rs6946768	1.00[GIH][hapmap]
rs6948685	0.87[ASW][hapmap];0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[MKK][hapmap]
rs6948699	1.00[ASN][1000 genomes]
rs6953107	1.00[ASN][1000 genomes]
rs6953749	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6955362	0.88[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6955367	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6957928	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6962151	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965458	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs6970806	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6970828	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6972167	0.86[ASN][1000 genomes]
rs6974286	1.00[ASN][1000 genomes]
rs6975514	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6978739	1.00[ASN][1000 genomes]
rs6979335	1.00[ASN][1000 genomes]
rs6979910	0.85[CEU][hapmap]
rs705866	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs73161759	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73161762	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73403312	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73405353	1.00[ASN][1000 genomes]
rs7341507	0.85[CEU][hapmap]
rs7783159	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7783550	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs7787620	0.92[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];1.00[ASN][1000 genomes]
rs7787825	1.00[ASN][1000 genomes]
rs7792525	0.85[CEU][hapmap]
rs7792959	0.85[CEU][hapmap]
rs7794485	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800667	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803454	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7809801	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7811142	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases
4	nsv527107	chr7:100014711-100064719	Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	269 gene(s)	inside rSNPs	diseases
5	nsv888776	chr7:100014711-100198386	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
6	nsv888777	chr7:100014711-100221867	Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
7	nsv888778	chr7:100014711-100236593	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	310 gene(s)	inside rSNPs	diseases
8	nsv888779	chr7:100014711-100313420	Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	321 gene(s)	inside rSNPs	diseases

mRNA abundance (count:58)

SNP	Gene	Cis/trans	Tissue	Source
rs6975729	PILRB	cis	lymphoblastoid	seeQTL
rs6975729	PILRA	cis	Skin Sun Exposed Lower leg	GTEx
rs6975729	ZCWPW1	cis	cerebellum	SCAN
rs6975729	PVRIG2P	cis	Nerve Tibial	GTEx
rs6975729	PILRA	cis	Adipose Subcutaneous	GTEx
rs6975729	STAG3L5P	cis	Skin Sun Exposed Lower leg	GTEx
rs6975729	MEPCE	cis	lymphoblastoid	seeQTL
rs6975729	PILRB	Cis_1M	lymphoblastoid	RTeQTL
rs6975729	PILRB	cis	parietal	SCAN
rs6975729	PVRIG2P	cis	Artery Tibial	GTEx
rs6975729	STAG3L5P	cis	Esophagus Mucosa	GTEx
rs6975729	PILRB	cis	Artery Tibial	GTEx
rs6975729	STAG3L5P	cis	Adipose Subcutaneous	GTEx
rs6975729	PILRB	cis	Adipose Subcutaneous	GTEx
rs6975729	STAG3L5P	cis	Thyroid	GTEx
rs6975729	PILRB	cis	lung	GTEx
rs6975729	PMS2P1	cis	Thyroid	GTEx
rs6975729	PVRIG2P	cis	lung	GTEx
rs6975729	STAG3L5P	cis	Artery Tibial	GTEx
rs6975729	STAG3L5P	cis	lung	GTEx
rs6975729	PILRA	cis	Esophagus Muscularis	GTEx
rs6975729	PILRB	cis	Esophagus Mucosa	GTEx
rs6975729	PVRIG2P	cis	Thyroid	GTEx
rs6975729	PILRB	cis	Artery Aorta	GTEx
rs6975729	PILRA	cis	Esophagus Mucosa	GTEx
rs6975729	STAG3L5P	cis	Esophagus Muscularis	GTEx
rs6975729	PILRA	cis	Artery Aorta	GTEx
rs6975729	ZCWPW1	cis	parietal	SCAN
rs6975729	PVRIG2P	cis	Esophagus Mucosa	GTEx
rs6975729	PILRB	cis	Heart Left Ventricle	GTEx
rs6975729	GNB2	cis	parietal	SCAN
rs6975729	STAG3L5P	cis	Artery Aorta	GTEx
rs6975729	PILRA	cis	Stomach	GTEx
rs6975729	STAG3L5P	cis	Stomach	GTEx
rs6975729	PILRA	cis	cerebellum	SCAN
rs6975729	STAG3L5P	cis	Nerve Tibial	GTEx
rs6975729	STAG3	Cis_1M	lymphoblastoid	RTeQTL
rs6975729	PILRA	cis	Muscle Skeletal	GTEx
rs6975729	PILRB	cis	Muscle Skeletal	GTEx
rs6975729	PILRB	cis	Nerve Tibial	GTEx
rs6975729	PILRA	cis	parietal	SCAN
rs6975729	PVRIG	Cis_1M	lymphoblastoid	RTeQTL
rs6975729	PILRB	cis	multi-tissue	Pritchard
rs6975729	PILRA	cis	Heart Left Ventricle	GTEx
rs6975729	STAG3L5P	cis	Muscle Skeletal	GTEx
rs6975729	PVRIG	cis	cerebellum	SCAN
rs6975729	PILRB	cis	Thyroid	GTEx
rs6975729	PILRB	cis	Whole Blood	GTEx
rs6975729	PILRA	cis	Nerve Tibial	GTEx
rs6975729	PILRA	cis	Thyroid	GTEx
rs6975729	PILRB	cis	cerebellum	SCAN
rs6975729	STAG3L5P	cis	Heart Left Ventricle	GTEx
rs6975729	PILRB	cis	Esophagus Muscularis	GTEx
rs6975729	CNPY4	cis	cerebellum	SCAN
rs6975729	PILRA	cis	Artery Tibial	GTEx
rs6975729	PVRIG2P	cis	Adipose Subcutaneous	GTEx
rs6975729	PILRB	cis	Skin Sun Exposed Lower leg	GTEx
rs6975729	GATS	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100025400-100028200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:100025400-100028200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:100025400-100028200	Active TSS	Brain Germinal Matrix	brain
4	chr7:100025400-100028200	Active TSS	Fetal Brain Female	brain
5	chr7:100025400-100028200	Active TSS	Rectal Smooth Muscle	rectum
6	chr7:100025400-100028600	Active TSS	Fetal Kidney	kidney
7	chr7:100025400-100028800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:100025600-100028200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:100025600-100028200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:100025600-100028200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr7:100025600-100028200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:100025600-100028200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:100025600-100028200	Active TSS	Brain Angular Gyrus	brain
14	chr7:100025600-100028200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:100025600-100028200	Active TSS	Gastric	stomach
16	chr7:100025600-100028200	Active TSS	Rectal Mucosa Donor 31	rectum
17	chr7:100025600-100028200	Active TSS	HSMM	muscle
18	chr7:100025600-100028400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
19	chr7:100025600-100028400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:100025600-100028600	Active TSS	NHLF	lung
21	chr7:100025600-100028800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr7:100025800-100028200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:100025800-100028200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr7:100025800-100028200	Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr7:100025800-100028200	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr7:100025800-100028200	Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr7:100025800-100028200	Active TSS	Primary T killer memory cells from peripheral blood	blood
28	chr7:100025800-100028200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:100025800-100028200	Active TSS	Brain Anterior Caudate	brain
30	chr7:100025800-100028200	Active TSS	Brain Cingulate Gyrus	brain
31	chr7:100025800-100028200	Active TSS	Brain Hippocampus Middle	brain
32	chr7:100025800-100028200	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr7:100025800-100028200	Active TSS	Brain Substantia Nigra	brain
34	chr7:100025800-100028200	Active TSS	Fetal Stomach	stomach
35	chr7:100025800-100028200	Active TSS	Left Ventricle	heart
36	chr7:100025800-100028200	Active TSS	Right Ventricle	heart
37	chr7:100025800-100028200	Active TSS	Thymus	Thymus
38	chr7:100025800-100028200	Active TSS	A549	lung
39	chr7:100025800-100028400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:100025800-100028400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr7:100025800-100028400	Active TSS	Fetal Intestine Large	intestine
42	chr7:100025800-100028400	Active TSS	Placenta Amnion	Placenta Amnion
43	chr7:100025800-100028600	Active TSS	iPS-15b Cell Line	embryonic stem cell
44	chr7:100025800-100028600	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr7:100025800-100028600	Active TSS	Psoas Muscle	Psoas
46	chr7:100025800-100028800	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr7:100026000-100028200	Active TSS	H1 Cell Line	embryonic stem cell
48	chr7:100026000-100028200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:100026000-100028200	Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr7:100026000-100028200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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