Variant report

Variant	rs11562941
Chromosome Location	chr2:234815167-234815168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234783189..234785802-chr2:234814089..234815780,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1004478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10490010	0.93[CEU][hapmap];0.83[TSI][hapmap]
rs10803665	0.93[CEU][hapmap];0.89[TSI][hapmap]
rs10803666	0.93[CEU][hapmap];0.83[TSI][hapmap]
rs10929317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11562954	0.93[CEU][hapmap];0.89[TSI][hapmap]
rs11563217	0.81[GIH][hapmap]
rs11563220	0.81[GIH][hapmap]
rs12470426	0.87[TSI][hapmap]
rs12473889	0.93[CEU][hapmap]
rs12988953	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13028228	0.93[CEU][hapmap]
rs17862920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17862921	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17863838	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17863841	0.93[CEU][hapmap]
rs17863842	0.93[CEU][hapmap]
rs17864738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17864741	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs35168608	0.83[EUR][1000 genomes]
rs6717978	1.00[EUR][1000 genomes]
rs6717992	1.00[EUR][1000 genomes]
rs6741751	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7558436	0.93[CEU][hapmap]
rs7562952	0.93[CEU][hapmap];0.89[TSI][hapmap]
rs7562971	0.93[CEU][hapmap]
rs7564831	0.81[GIH][hapmap]
rs7577262	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs9646718	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234814200-234815200	Enhancers	Stomach Mucosa	stomach
2	chr2:234814800-234815200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
3	chr2:234815000-234815200	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links