Variant report

Variant	rs12988953
Chromosome Location	chr2:234826661-234826662
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1004478	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10929317	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11562941	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17862920	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17862921	0.96[EUR][1000 genomes]
rs17863838	0.96[EUR][1000 genomes]
rs17864738	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17864741	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35168608	0.81[EUR][1000 genomes]
rs6717978	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6717992	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6741751	0.96[EUR][1000 genomes]
rs7577262	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9646718	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234825000-234827200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:234826200-234830000	Weak transcription	Brain Germinal Matrix	brain
3	chr2:234826400-234827600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:234826600-234826800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:234826600-234826800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:234826600-234827600	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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