Variant report

Variant	rs35168608
Chromosome Location	chr2:234832232-234832233
allele	CA/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1004478	0.85[EUR][1000 genomes]
rs10803665	0.89[EUR][1000 genomes]
rs10929317	0.83[EUR][1000 genomes]
rs11562941	0.83[EUR][1000 genomes]
rs12470426	0.82[ASN][1000 genomes]
rs12473889	0.82[ASN][1000 genomes]
rs12988953	0.81[EUR][1000 genomes]
rs17862920	0.85[EUR][1000 genomes]
rs17862921	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17863838	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17863841	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17863842	0.82[ASN][1000 genomes]
rs17864738	0.83[EUR][1000 genomes]
rs17864741	0.85[EUR][1000 genomes]
rs17868384	0.82[ASN][1000 genomes]
rs6717978	0.83[EUR][1000 genomes]
rs6717992	0.83[EUR][1000 genomes]
rs6741751	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs67646620	0.82[ASN][1000 genomes]
rs7558436	0.89[EUR][1000 genomes]
rs7562952	0.84[ASN][1000 genomes]
rs7562971	0.84[ASN][1000 genomes]
rs7577262	0.85[EUR][1000 genomes]
rs7602303	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9646718	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234827600-234834000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:234827800-234833600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links