Variant report
| Variant | rs11563496 |
|---|---|
| Chromosome Location | chr7:126749815-126749816 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10242944 | 0.86[GIH][hapmap] |
| rs11563302 | 0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap] |
| rs11563405 | 1.00[ASW][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap] |
| rs11563492 | 1.00[ASW][hapmap];0.91[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap] |
| rs11563511 | 0.86[GIH][hapmap] |
| rs11563720 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs11563793 | 0.86[GIH][hapmap] |
| rs17862303 | 0.91[CEU][hapmap] |
| rs17862304 | 0.91[CEU][hapmap] |
| rs17862311 | 0.83[AMR][1000 genomes] |
| rs17863229 | 1.00[YRI][hapmap] |
| rs17864125 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs17867741 | 0.89[GIH][hapmap] |
| rs6952013 | 0.91[CEU][hapmap] |
| rs7778604 | 0.85[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11563496 | SLC13A1 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
