Variant report
| Variant | rs17864125 |
|---|---|
| Chromosome Location | chr7:126729256-126729257 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:126727758..126729748-chr7:126749664..126752422,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000179603 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10242944 | 0.82[MEX][hapmap] |
| rs11563405 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs11563492 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs11563496 | 1.00[ASW][hapmap];1.00[YRI][hapmap] |
| rs11563720 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11563793 | 0.82[MEX][hapmap] |
| rs17863229 | 1.00[YRI][hapmap] |
| rs17864129 | 1.00[CEU][hapmap] |
| rs17867741 | 0.82[MEX][hapmap] |
| rs61759542 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831121 | chr7:126593363-126774413 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv889189 | chr7:126699088-126963028 | Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | esv2761367 | chr7:126717157-126865324 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:5)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs17864125 | GPR37 | cis | cerebellum | SCAN |
| rs17864125 | KLHDC10 | cis | parietal | SCAN |
| rs17864125 | SLC13A1 | cis | cerebellum | SCAN |
| rs17864125 | MED26 | trans | cerebellum | SCAN |
| rs17864125 | CADPS2 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
