Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1002773	0.88[EUR][1000 genomes]
rs10895996	0.82[YRI][hapmap]
rs10896159	1.00[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10896271	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs10896272	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.81[YRI][hapmap]
rs10896333	0.81[EUR][1000 genomes]
rs11227719	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11228071	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11228165	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap]
rs11228166	0.81[CHB][hapmap]
rs11600863	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1351534	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1573511	0.88[EUR][1000 genomes]
rs17150286	0.88[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17150411	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap]
rs1842674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1894026	0.88[EUR][1000 genomes]
rs1945232	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4939044	0.87[EUR][1000 genomes]
rs57377676	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7126993	0.88[EUR][1000 genomes]
rs7481663	0.88[EUR][1000 genomes]
rs998544	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975114	chr11:55751535-56124251	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044859	chr11:55900482-56121727	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1050024	chr11:55900482-56518943	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	52 gene(s)	inside rSNPs	diseases
4	nsv497854	chr11:55917298-56537994	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	50 gene(s)	inside rSNPs	diseases
5	nsv832161	chr11:56046173-56166964	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56055600-56058200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr11:56055800-56056800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:56056000-56057000	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr11:56056000-56057600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:56056200-56057200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:56056400-56057600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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