Variant report

Variant	rs1156821
Chromosome Location	chr2:160994348-160994349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160993718..160995794-chr2:160997568..160999439,2	MCF-7	breast:
2	chr2:160992962..160997280-chr2:160998915..161002711,4	K562	blood:
3	chr2:160992962..160995573-chr2:161000331..161001986,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10176194	0.81[CHD][hapmap]
rs10179610	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10202454	0.82[GIH][hapmap]
rs11890075	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs12478021	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs12621559	1.00[AFR][1000 genomes]
rs13394453	0.93[CHB][hapmap]
rs13394676	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs13403826	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs1457239	0.82[GIH][hapmap]
rs17242280	1.00[MEX][hapmap]
rs2124971	0.82[GIH][hapmap]
rs2168672	0.82[GIH][hapmap]
rs2279012	1.00[AFR][1000 genomes]
rs2290706	0.82[GIH][hapmap]
rs3755547	0.94[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap]
rs4337434	0.88[CHB][hapmap]
rs4473342	0.94[CHB][hapmap]
rs6432594	0.88[CHB][hapmap];0.85[CHD][hapmap]
rs6730023	0.82[GIH][hapmap]
rs6747699	0.88[CHB][hapmap]
rs6758074	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs7586660	0.94[CHB][hapmap]
rs7596372	0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459929	chr2:160963603-161079435	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv583497	chr2:160963603-161079435	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875346	chr2:160965335-161044155	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1001502	chr2:160967864-161079450	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160959200-161004200	Weak transcription	Gastric	stomach
2	chr2:160959400-161032800	Weak transcription	Psoas Muscle	Psoas
3	chr2:160980600-160996400	Weak transcription	HSMMtube	muscle
4	chr2:160983200-161005200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr2:160990000-161005000	Weak transcription	Colonic Mucosa	Colon
6	chr2:160993000-160994600	Strong transcription	Duodenum Mucosa	Duodenum
7	chr2:160993000-160995600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:160993200-161002200	Weak transcription	Lung	lung
9	chr2:160993400-160995600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:160993600-160994400	Strong transcription	Fetal Intestine Large	intestine
11	chr2:160993600-160994400	Strong transcription	Fetal Muscle Leg	muscle
12	chr2:160993600-160994400	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr2:160993600-160994400	Enhancers	Dnd41	blood
14	chr2:160993600-160994800	Strong transcription	Placenta Amnion	Placenta Amnion
15	chr2:160993600-160994800	Strong transcription	Skeletal Muscle Male	skeletal muscle
16	chr2:160993600-160995000	Strong transcription	HSMM	muscle
17	chr2:160993600-160998600	Strong transcription	HMEC	breast
18	chr2:160993600-160998800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr2:160993800-160994400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr2:160993800-160994400	ZNF genes & repeats	Esophagus	oesophagus
21	chr2:160993800-160994400	Strong transcription	Fetal Intestine Small	intestine
22	chr2:160993800-160994400	Strong transcription	Pancreas	Pancrea
23	chr2:160993800-160994400	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr2:160993800-160994600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:160993800-160994600	Strong transcription	Fetal Muscle Trunk	muscle
26	chr2:160993800-160994800	ZNF genes & repeats	NHEK	skin
27	chr2:160993800-160997200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:160994000-160994400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr2:160994000-160994400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:160994000-160997200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr2:160994200-160996800	Weak transcription	Fetal Stomach	stomach
32	chr2:160994200-160998400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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