Variant report

Variant	rs10176194
Chromosome Location	chr2:160921813-160921814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:160921789-160921839	RPTEC	kidney:	n/a
2	chr2:160921789-160921839	NHDF-neo	bronchial:	n/a
3	chr2:160921789-160921839	Caco-2	colon:	n/a
4	chr2:160921789-160921839	H1-hESC	embryonic stem cell:	embryo
5	chr2:160921789-160921839	MCF10A-Er-Src	breast:	n/a
6	chr2:160921789-160921839	HepG2	liver:	n/a
7	chr2:160921789-160921839	K562	blood:	n/a
8	chr2:160921789-160921839	IMR90	lung:	fetal
9	chr2:160921789-160921839	SKMC	muscle:	n/a
10	chr2:160921789-160921839	NB4	blood:	n/a
11	chr2:160921789-160921839	MCF-7	breast:	n/a
12	chr2:160921789-160921839	SAEC	small airway:	n/a
13	chr2:160921789-160921839	AG10803	skin:	n/a
14	chr2:160921789-160921839	HCT-116	colon:	n/a
15	chr2:160921789-160921839	LNCaP	prostate:	n/a
16	chr2:160921789-160921839	ovcar-3	ovarian:	n/a
17	chr2:160921789-160921839	PFSK-1	brain:	n/a
18	chr2:160921789-160921839	A549	lung:	n/a
19	chr2:160921789-160921839	HNPCEpiC	eye:	n/a
20	chr2:160921789-160921839	AG04450	lung:	fetal
21	chr2:160921789-160921839	AG09309	skin:	n/a
22	chr2:160921789-160921839	Jurkat	blood:	n/a
23	chr2:160921789-160921839	HAEpiC	amniotic membrane:	n/a
24	chr2:160921789-160921839	HUVEC	blood vessel:	n/a
25	chr2:160921789-160921839	GM12878	blood:	n/a
26	chr2:160921789-160921839	SK-N-MC	brain:	n/a
27	chr2:160921789-160921839	HCPEpiC	choroid plexus:	n/a
28	chr2:160921789-160921839	HMEC	breast:	n/a
29	chr2:160921789-160921839	SK-N-SH_RA	brain:	n/a
30	chr2:160921789-160921839	HEK293	kidney:	embryo
31	chr2:160921789-160921839	NT2-D1	testis:	n/a
32	chr2:160921789-160921839	HRPEpiC	eye:	n/a
33	chr2:160921789-160921839	SK-N-SH	brain:	n/a
34	chr2:160921789-160921839	GM12892	blood:	n/a
35	chr2:160921789-160921839	NHBE	bronchial:	n/a
36	chr2:160921789-160921839	ProgFib	skin:	n/a
37	chr2:160921789-160921839	GM19239	blood:	n/a
38	chr2:160921789-160921839	HCM	heart:	n/a
39	chr2:160921789-160921839	GM12891	blood:	n/a
40	chr2:160921789-160921839	AG09319	gingival:	n/a
41	chr2:160921789-160921839	HRE	kidney:	n/a
42	chr2:160921789-160921839	HEEpiC	esophagus:	n/a
43	chr2:160921789-160921839	HRCEpiC	kidney:	n/a
44	chr2:160921789-160921839	Hela-S3	cervix:	n/a
45	chr2:160921789-160921839	GM06990	blood:	n/a
46	chr2:160921789-160921839	Hepatocyte	liver:	n/a
47	chr2:160921789-160921839	HCF	heart:	n/a
48	chr2:160921789-160921839	AoSMC	blood vessel:	n/a
49	chr2:160921789-160921839	BJ	skin:	n/a
50	chr2:160921789-160921839	PrEC	prostate:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160914183..160918448-chr2:160920059..160924160,4	K562	blood:

No data

Variant related genes	Relation type
PLA2R1	CpG island

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10165829	1.00[ASN][1000 genomes]
rs10165927	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10179610	0.83[CHD][hapmap]
rs1156821	0.81[CHD][hapmap]
rs11884373	1.00[ASN][1000 genomes]
rs11890075	1.00[CEU][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12469192	0.81[ASN][1000 genomes]
rs12470622	0.81[ASN][1000 genomes]
rs12477682	0.81[ASN][1000 genomes]
rs12478021	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs13390820	0.81[ASN][1000 genomes]
rs13394453	0.87[JPT][hapmap]
rs13403826	0.92[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs13429856	0.81[ASN][1000 genomes]
rs13432522	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16844726	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2667026	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3109389	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs34761275	0.81[ASN][1000 genomes]
rs3755547	0.90[CHD][hapmap];0.94[JPT][hapmap]
rs4337434	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs4473342	0.94[JPT][hapmap]
rs59236613	0.84[ASN][1000 genomes]
rs61377083	0.84[ASN][1000 genomes]
rs6432594	1.00[CEU][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6747699	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6758074	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6760500	0.81[ASN][1000 genomes]
rs73006633	0.95[EUR][1000 genomes]
rs7586660	0.94[JPT][hapmap]
rs925409	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10176194	PLA2R1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160920000-160922000	Enhancers	Fetal Intestine Small	intestine
2	chr2:160920000-160922600	Enhancers	Fetal Intestine Large	intestine
3	chr2:160921000-160930200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:160921400-160922000	Enhancers	NHEK	skin
5	chr2:160921600-160926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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