Variant report

Variant	rs16844726
Chromosome Location	chr2:160918386-160918387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160914183..160918448-chr2:160920059..160924160,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10165829	0.89[ASN][1000 genomes]
rs10165927	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10176194	1.00[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11884373	0.89[ASN][1000 genomes]
rs11890075	1.00[CEU][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs12478021	0.86[JPT][hapmap]
rs13394453	0.84[JPT][hapmap]
rs13403826	0.86[JPT][hapmap]
rs13432522	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2667026	0.87[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs3109389	0.93[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs3755547	0.86[JPT][hapmap]
rs4337434	0.87[JPT][hapmap]
rs4473342	0.87[JPT][hapmap]
rs6432594	1.00[CEU][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes]
rs6747699	0.87[JPT][hapmap]
rs6758074	0.86[JPT][hapmap]
rs73006633	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7586660	0.87[JPT][hapmap]
rs925409	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160913600-160918400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:160914400-160918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:160916800-160919600	Active TSS	Fetal Kidney	kidney
4	chr2:160917400-160919200	Active TSS	NH-A	brain
5	chr2:160917400-160919200	Active TSS	Osteobl	bone
6	chr2:160917400-160919400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:160917600-160918400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:160917600-160918400	Flanking Active TSS	Fetal Intestine Large	intestine
9	chr2:160917800-160918400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:160917800-160918400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:160917800-160918400	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr2:160917800-160918400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
13	chr2:160917800-160919000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
14	chr2:160917800-160919400	Active TSS	Stomach Smooth Muscle	stomach
15	chr2:160917800-160919600	Active TSS	Rectal Smooth Muscle	rectum
16	chr2:160918000-160918400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr2:160918000-160918800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:160918000-160918800	Enhancers	Fetal Heart	heart
19	chr2:160918000-160919200	Active TSS	HMEC	breast
20	chr2:160918000-160919200	Active TSS	HSMM	muscle
21	chr2:160918000-160919400	Active TSS	Fetal Intestine Small	intestine
22	chr2:160918000-160919400	Bivalent/Poised TSS	Fetal Stomach	stomach
23	chr2:160918000-160919400	Active TSS	Rectal Mucosa Donor 31	rectum
24	chr2:160918000-160919400	Active TSS	HSMMtube	muscle
25	chr2:160918000-160919600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr2:160918000-160919600	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr2:160918000-160919600	Active TSS	NHDF-Ad	bronchial
28	chr2:160918000-160919800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:160918000-160919800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:160918200-160918400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
31	chr2:160918200-160918400	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr2:160918200-160918400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr2:160918200-160918400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
34	chr2:160918200-160918400	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr2:160918200-160918400	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:160918200-160918400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:160918200-160918400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr2:160918200-160918400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
39	chr2:160918200-160918400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr2:160918200-160918400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr2:160918200-160918400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr2:160918200-160918400	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr2:160918200-160918400	Bivalent Enhancer	Brain Germinal Matrix	brain
44	chr2:160918200-160918400	Flanking Active TSS	Colonic Mucosa	Colon
45	chr2:160918200-160918400	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr2:160918200-160918400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
47	chr2:160918200-160918400	Bivalent Enhancer	Fetal Brain Male	brain
48	chr2:160918200-160918400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
49	chr2:160918200-160918400	Bivalent Enhancer	Fetal Thymus	thymus
50	chr2:160918200-160918400	Flanking Active TSS	Right Atrium	heart

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