Variant report

Variant	rs13403826
Chromosome Location	chr2:160963372-160963373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160953931..160959530-chr2:160960677..160963747,5	MCF-7	breast:
2	chr2:160963372..160965662-chr2:161085963..161088165,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10165829	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10165927	0.81[ASN][1000 genomes]
rs10171644	0.92[YRI][hapmap]
rs10176194	0.92[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10179610	0.88[CHB][hapmap];0.90[CHD][hapmap]
rs10197183	0.85[YRI][hapmap]
rs10202454	0.96[GIH][hapmap]
rs10497208	0.82[YRI][hapmap]
rs10929971	0.82[YRI][hapmap]
rs1156821	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs11884373	0.81[ASN][1000 genomes]
rs11890075	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11897691	0.82[YRI][hapmap]
rs11902965	0.82[YRI][hapmap]
rs12469192	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470622	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477682	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478021	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13027372	0.82[YRI][hapmap]
rs13390820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394453	0.93[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs13401953	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13413256	0.87[YRI][hapmap]
rs13426637	0.88[YRI][hapmap]
rs13429856	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432255	0.98[ASN][1000 genomes]
rs13432522	1.00[ASN][1000 genomes]
rs1457238	0.82[YRI][hapmap]
rs1457239	0.96[GIH][hapmap];0.85[YRI][hapmap]
rs16844726	0.86[JPT][hapmap]
rs16844830	0.87[ASN][1000 genomes]
rs1902622	0.82[YRI][hapmap]
rs2124971	0.96[GIH][hapmap];0.82[YRI][hapmap]
rs2168672	0.96[GIH][hapmap]
rs2290706	0.96[GIH][hapmap];0.82[YRI][hapmap]
rs2667026	0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3109389	0.94[JPT][hapmap]
rs34761275	1.00[ASN][1000 genomes]
rs3755547	0.94[ASW][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4337434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4473342	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs59236613	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61377083	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62175554	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432594	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6432600	0.82[YRI][hapmap]
rs6432601	0.82[YRI][hapmap]
rs6432602	0.82[YRI][hapmap]
rs6730023	0.96[GIH][hapmap]
rs6735425	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760500	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563574	0.82[YRI][hapmap]
rs7579481	0.82[YRI][hapmap]
rs7584446	0.82[YRI][hapmap]
rs7586660	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.87[ASN][1000 genomes]
rs7596372	0.82[ASW][hapmap];0.96[GIH][hapmap];0.89[YRI][hapmap]
rs7599127	0.98[ASN][1000 genomes]
rs897832	0.82[YRI][hapmap]
rs925409	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs9973856	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:160954600-160970800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:160954600-160993000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:160954800-160963800	Weak transcription	Fetal Intestine Large	intestine
6	chr2:160954800-160966200	Weak transcription	Fetal Intestine Small	intestine
7	chr2:160955400-160965000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:160955800-160968800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:160956200-160965600	Strong transcription	HMEC	breast
10	chr2:160957000-160970200	Weak transcription	Pancreas	Pancrea
11	chr2:160957400-160981200	Weak transcription	Lung	lung
12	chr2:160958400-160965200	Strong transcription	NHEK	skin
13	chr2:160959200-160963800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr2:160959200-161004200	Weak transcription	Gastric	stomach
15	chr2:160959400-160985200	Weak transcription	Esophagus	oesophagus
16	chr2:160959400-161032800	Weak transcription	Psoas Muscle	Psoas
17	chr2:160959800-160965800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr2:160960000-160966400	Weak transcription	HSMMtube	muscle
19	chr2:160960400-160965600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr2:160960800-160964600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:160961000-160965600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr2:160962000-160966200	Strong transcription	HSMM	muscle
23	chr2:160962400-160963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:160962400-160970800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:160962800-160971000	Strong transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links