Variant report

Variant	rs12477682
Chromosome Location	chr2:160953864-160953865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10165829	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10165927	0.81[ASN][1000 genomes]
rs10171644	0.90[YRI][hapmap]
rs10176194	0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs10179610	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs10197183	0.90[YRI][hapmap]
rs10497208	0.91[YRI][hapmap]
rs10929971	0.91[YRI][hapmap]
rs1156821	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs11884373	0.81[ASN][1000 genomes]
rs11890075	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11897691	0.91[YRI][hapmap]
rs11902965	0.90[YRI][hapmap]
rs12469192	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470622	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13027372	0.90[YRI][hapmap]
rs13390820	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394453	0.93[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs13401953	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13403826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413256	0.90[YRI][hapmap]
rs13413895	0.80[AFR][1000 genomes]
rs13426637	0.90[YRI][hapmap]
rs13429856	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432255	0.98[ASN][1000 genomes]
rs13432522	1.00[ASN][1000 genomes]
rs1457238	0.90[YRI][hapmap]
rs1457239	0.95[YRI][hapmap]
rs16844726	0.84[JPT][hapmap]
rs16844830	0.87[ASN][1000 genomes]
rs1902622	0.91[YRI][hapmap]
rs2124971	0.90[YRI][hapmap]
rs2290706	0.90[YRI][hapmap]
rs2667026	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3109389	0.93[JPT][hapmap]
rs34761275	1.00[ASN][1000 genomes]
rs3755547	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4337434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4473342	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[ASN][1000 genomes]
rs59236613	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61377083	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62175554	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432594	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6432600	0.91[YRI][hapmap]
rs6432601	0.91[YRI][hapmap]
rs6432602	0.91[YRI][hapmap]
rs6735425	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760500	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563574	0.91[YRI][hapmap]
rs7579481	0.91[YRI][hapmap]
rs7584446	0.91[YRI][hapmap]
rs7586660	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[ASN][1000 genomes]
rs7596372	1.00[YRI][hapmap]
rs7599127	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs897832	0.90[YRI][hapmap]
rs925409	1.00[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9973856	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160948600-160959800	Weak transcription	HSMM	muscle
2	chr2:160949600-160955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:160950400-160958600	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:160950800-160967000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:160952600-160954400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:160952600-160955400	Enhancers	HMEC	breast
7	chr2:160953000-160955000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:160953200-160954200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr2:160953200-160970800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:160953400-160954000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr2:160953400-160955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:160953400-160958400	Weak transcription	NHEK	skin
13	chr2:160953800-160954600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr2:160953800-160954600	Enhancers	Duodenum Mucosa	Duodenum
15	chr2:160953800-160954800	Enhancers	Fetal Intestine Large	intestine
16	chr2:160953800-160954800	Enhancers	Fetal Intestine Small	intestine
17	chr2:160953800-160954800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr2:160953800-160958600	Weak transcription	HSMMtube	muscle
19	chr2:160953800-160959000	Weak transcription	Placenta Amnion	Placenta Amnion

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