Variant report

Variant	rs6760500
Chromosome Location	chr2:160948106-160948107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160947997..160950748-chr2:160956383..160959189,2	MCF-7	breast:
2	chr2:160947091..160949558-chr2:161085857..161088575,2	MCF-7	breast:
3	chr2:160942842..160945929-chr2:160946103..160949218,3	MCF-7	breast:
4	chr2:160833268..160836077-chr2:160947989..160949879,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10165829	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10165927	0.81[ASN][1000 genomes]
rs10171644	0.89[YRI][hapmap]
rs10176194	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10179610	0.88[CHB][hapmap]
rs10197183	0.96[YRI][hapmap]
rs10497208	0.96[YRI][hapmap]
rs10929971	0.96[YRI][hapmap]
rs1156821	0.88[CHB][hapmap]
rs11884373	0.81[ASN][1000 genomes]
rs11890075	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11897691	0.96[YRI][hapmap]
rs11902965	0.96[YRI][hapmap]
rs12469192	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477682	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13027372	0.96[YRI][hapmap]
rs13390820	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394453	0.94[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs13401953	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13403826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13413256	0.96[YRI][hapmap]
rs13413895	0.80[AFR][1000 genomes]
rs13426637	0.96[YRI][hapmap]
rs13429856	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432255	0.98[ASN][1000 genomes]
rs13432522	1.00[ASN][1000 genomes]
rs1457235	0.86[YRI][hapmap]
rs1457238	0.96[YRI][hapmap]
rs1457239	1.00[YRI][hapmap]
rs16844726	0.87[JPT][hapmap]
rs16844824	0.85[YRI][hapmap]
rs16844830	0.87[ASN][1000 genomes]
rs1902622	0.96[YRI][hapmap]
rs2124971	0.96[YRI][hapmap]
rs2290706	0.96[YRI][hapmap]
rs2667026	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3109389	0.94[JPT][hapmap]
rs34761275	1.00[ASN][1000 genomes]
rs3755547	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs4337434	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4473342	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs59236613	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61377083	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62175554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432594	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6432600	0.96[YRI][hapmap]
rs6432601	0.96[YRI][hapmap]
rs6432602	0.96[YRI][hapmap]
rs6735425	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758074	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7563574	0.96[YRI][hapmap]
rs7579481	0.96[YRI][hapmap]
rs7584446	0.96[YRI][hapmap]
rs7586660	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs7596372	1.00[YRI][hapmap]
rs7599127	0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs897832	0.96[YRI][hapmap]
rs925409	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs9973856	0.85[AFR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160946200-160949000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:160947400-160948200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:160947400-160948600	Enhancers	Hela-S3	cervix
4	chr2:160947400-160948600	Enhancers	NHDF-Ad	bronchial
5	chr2:160947400-160949400	Enhancers	NHEK	skin
6	chr2:160947400-160949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:160947400-160949600	Enhancers	HMEC	breast
8	chr2:160947600-160948200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr2:160947600-160948600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:160947600-160948600	Enhancers	A549	lung
11	chr2:160947800-160948200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:160947800-160948400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:160947800-160948400	Enhancers	Muscle Satellite Cultured Cells	--
14	chr2:160947800-160948600	Enhancers	HSMM	muscle
15	chr2:160948000-160948400	Enhancers	Osteobl	bone

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