Variant report

Variant	rs925409
Chromosome Location	chr2:160918984-160918985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10165829	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10165927	0.92[ASN][1000 genomes]
rs10176194	0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11884373	0.92[ASN][1000 genomes]
rs11890075	0.88[JPT][hapmap]
rs12469192	0.89[EUR][1000 genomes]
rs12470622	0.89[EUR][1000 genomes]
rs12477682	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12478021	0.87[JPT][hapmap]
rs13390820	0.81[EUR][1000 genomes]
rs13394453	0.85[JPT][hapmap]
rs13403826	1.00[CEU][hapmap];0.87[JPT][hapmap];0.81[EUR][1000 genomes]
rs13429856	0.81[EUR][1000 genomes]
rs1457236	0.83[YRI][hapmap]
rs16844726	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2667026	0.94[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs3109389	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3755547	0.87[JPT][hapmap]
rs4337434	0.88[JPT][hapmap]
rs4473342	0.88[JPT][hapmap]
rs59236613	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61377083	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62175554	0.89[EUR][1000 genomes]
rs6432594	0.87[JPT][hapmap]
rs6735425	0.91[EUR][1000 genomes]
rs6747699	1.00[CEU][hapmap];0.88[JPT][hapmap];0.89[EUR][1000 genomes]
rs6758074	1.00[CEU][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes]
rs6760500	0.89[EUR][1000 genomes]
rs7586660	0.88[JPT][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160916800-160919600	Active TSS	Fetal Kidney	kidney
2	chr2:160917400-160919200	Active TSS	NH-A	brain
3	chr2:160917400-160919200	Active TSS	Osteobl	bone
4	chr2:160917400-160919400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:160917800-160919000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
6	chr2:160917800-160919400	Active TSS	Stomach Smooth Muscle	stomach
7	chr2:160917800-160919600	Active TSS	Rectal Smooth Muscle	rectum
8	chr2:160918000-160919200	Active TSS	HMEC	breast
9	chr2:160918000-160919200	Active TSS	HSMM	muscle
10	chr2:160918000-160919400	Active TSS	Fetal Intestine Small	intestine
11	chr2:160918000-160919400	Bivalent/Poised TSS	Fetal Stomach	stomach
12	chr2:160918000-160919400	Active TSS	Rectal Mucosa Donor 31	rectum
13	chr2:160918000-160919400	Active TSS	HSMMtube	muscle
14	chr2:160918000-160919600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:160918000-160919600	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr2:160918000-160919600	Active TSS	NHDF-Ad	bronchial
17	chr2:160918000-160919800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:160918000-160919800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr2:160918200-160919200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr2:160918200-160919200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr2:160918200-160919400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:160918200-160919400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr2:160918200-160919400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr2:160918200-160919400	Active TSS	Duodenum Mucosa	Duodenum
25	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
27	chr2:160918200-160919600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
28	chr2:160918200-160919600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
29	chr2:160918200-160919600	Active TSS	Esophagus	oesophagus
30	chr2:160918200-160919600	Active TSS	Spleen	Spleen
31	chr2:160918200-160919600	Active TSS	A549	lung
32	chr2:160918200-160919600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
33	chr2:160918200-160919600	Active TSS	NHLF	lung
34	chr2:160918200-160919800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
35	chr2:160918200-160919800	Active TSS	H9 Cell Line	embryonic stem cell
36	chr2:160918200-160919800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
37	chr2:160918200-160919800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
38	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells	blood
39	chr2:160918200-160919800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr2:160918200-160919800	Active TSS	Aorta	Aorta
41	chr2:160918200-160919800	Active TSS	Brain Angular Gyrus	brain
42	chr2:160918200-160919800	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr2:160918200-160919800	Active TSS	Ovary	ovary
44	chr2:160918200-160920000	Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr2:160918400-160919000	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr2:160918400-160919000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
47	chr2:160918400-160919000	Bivalent/Poised TSS	Left Ventricle	heart
48	chr2:160918400-160919200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr2:160918400-160919200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr2:160918400-160919200	Bivalent/Poised TSS	Primary T helper 17 cells PMA-I stimulated	--

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