Variant report

Variant	rs13429856
Chromosome Location	chr2:160950625-160950626
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:160947997..160950748-chr2:160956383..160959189,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10165829	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10165927	0.81[ASN][1000 genomes]
rs10176194	0.81[ASN][1000 genomes]
rs11884373	0.81[ASN][1000 genomes]
rs11890075	1.00[ASN][1000 genomes]
rs12469192	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12470622	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477682	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12478021	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13390820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394453	0.87[ASN][1000 genomes]
rs13401953	0.88[ASN][1000 genomes]
rs13403826	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13432255	0.98[ASN][1000 genomes]
rs13432522	1.00[ASN][1000 genomes]
rs16844830	0.87[ASN][1000 genomes]
rs2667026	0.81[ASN][1000 genomes]
rs34761275	1.00[ASN][1000 genomes]
rs3755547	0.87[ASN][1000 genomes]
rs4337434	1.00[ASN][1000 genomes]
rs4473342	0.87[ASN][1000 genomes]
rs59236613	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61377083	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62175554	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6432594	1.00[ASN][1000 genomes]
rs6735425	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6747699	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6758074	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6760500	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7586660	0.87[ASN][1000 genomes]
rs7599127	0.98[ASN][1000 genomes]
rs925409	0.81[EUR][1000 genomes]
rs9973856	0.89[AFR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160948600-160959800	Weak transcription	HSMM	muscle
2	chr2:160949400-160952600	Weak transcription	NHEK	skin
3	chr2:160949600-160952600	Weak transcription	HMEC	breast
4	chr2:160949600-160955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:160949800-160953000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:160950400-160950800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr2:160950400-160950800	Active TSS	Liver	Liver
8	chr2:160950400-160958600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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