Variant report

Variant	rs6735425
Chromosome Location	chr2:160948882-160948883
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:160947997..160950748-chr2:160956383..160959189,2	MCF-7	breast:
2	chr2:160947091..160949558-chr2:161085857..161088575,2	MCF-7	breast:
3	chr2:160942842..160945929-chr2:160946103..160949218,3	MCF-7	breast:
4	chr2:160833268..160836077-chr2:160947989..160949879,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10165829	0.92[EUR][1000 genomes]
rs10929970	0.80[AFR][1000 genomes]
rs11885142	0.80[AFR][1000 genomes]
rs11890075	0.98[ASN][1000 genomes]
rs11895959	0.80[AFR][1000 genomes]
rs12469192	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12470622	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12477682	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12478021	0.98[ASN][1000 genomes]
rs13390820	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13394453	0.84[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13401953	0.86[ASN][1000 genomes]
rs13403826	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13429856	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13432255	0.96[ASN][1000 genomes]
rs13432522	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16844830	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs34761275	0.98[ASN][1000 genomes]
rs3755547	0.85[ASN][1000 genomes]
rs4265965	0.80[AFR][1000 genomes]
rs4337434	0.98[ASN][1000 genomes]
rs4473342	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs59236613	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61377083	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62175554	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6432594	0.98[ASN][1000 genomes]
rs6747699	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6758074	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6760500	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7563574	0.82[AFR][1000 genomes]
rs7586660	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs7599127	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs925409	0.91[EUR][1000 genomes]
rs9973856	0.87[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160946200-160949000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:160947400-160949400	Enhancers	NHEK	skin
3	chr2:160947400-160949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:160947400-160949600	Enhancers	HMEC	breast
5	chr2:160948200-160949800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:160948600-160949400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:160948600-160959800	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links