Variant report

Variant	rs11569256
Chromosome Location	chr3:141688570-141688571
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1045279	0.81[EUR][1000 genomes]
rs11569198	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11569216	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12495978	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13069749	0.85[ASN][1000 genomes]
rs13081914	0.83[EUR][1000 genomes]
rs2063453	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2063454	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2271386	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2861421	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2862122	0.81[ASN][1000 genomes]
rs34092379	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34464850	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34486172	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34514405	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34579489	0.83[ASN][1000 genomes]
rs34773643	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35486283	0.83[ASN][1000 genomes]
rs35787200	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3811708	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3817176	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4315664	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4315665	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4683417	0.81[ASN][1000 genomes]
rs56129773	0.83[ASN][1000 genomes]
rs62283132	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6440054	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6803884	0.81[ASN][1000 genomes]
rs6806443	0.81[ASN][1000 genomes]
rs7619506	0.81[ASN][1000 genomes]
rs907293	0.81[ASN][1000 genomes]
rs963396	0.81[ASN][1000 genomes]
rs9815587	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9942	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3402943	chr3:141686262-141689235	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3342676	chr3:141686487-141689235	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3387674	chr3:141686662-141688810	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr3:141671600-141697400	Weak transcription	Gastric	stomach
8	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
9	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
10	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
11	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
12	chr3:141672000-141697000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:141672000-141700000	Weak transcription	Small Intestine	intestine
14	chr3:141672400-141688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:141674400-141690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:141674400-141708000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:141674600-141700400	Weak transcription	Esophagus	oesophagus
18	chr3:141674600-141712600	Weak transcription	Fetal Brain Male	brain
19	chr3:141676200-141703800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:141677400-141696200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:141677800-141691200	Weak transcription	Brain Anterior Caudate	brain
22	chr3:141677800-141739000	Weak transcription	Left Ventricle	heart
23	chr3:141678200-141688600	Weak transcription	Primary B cells from cord blood	blood
24	chr3:141678600-141688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr3:141678800-141745600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr3:141679400-141690600	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:141679600-141697000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:141679800-141691400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:141680000-141690600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:141680000-141697800	Weak transcription	NH-A	brain
31	chr3:141680000-141711200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr3:141680000-141731200	Weak transcription	Fetal Brain Female	brain
33	chr3:141680200-141697600	Weak transcription	Osteobl	bone
34	chr3:141680400-141697600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:141680600-141690000	Weak transcription	NHLF	lung
36	chr3:141680800-141691000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:141680800-141723200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:141682000-141696600	Weak transcription	Brain Cingulate Gyrus	brain
39	chr3:141682000-141711200	Weak transcription	GM12878-XiMat	blood
40	chr3:141682600-141690400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr3:141682600-141691000	Weak transcription	HMEC	breast
42	chr3:141682600-141691400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:141682600-141723400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr3:141682800-141688600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:141682800-141692200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr3:141682800-141695000	Weak transcription	Adipose Nuclei	Adipose
47	chr3:141682800-141695200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr3:141682800-141695400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr3:141682800-141695400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr3:141682800-141696800	Weak transcription	Brain Hippocampus Middle	brain

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