Variant report

Variant	rs9815587
Chromosome Location	chr3:141674548-141674549
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1045279	0.87[EUR][1000 genomes]
rs10804681	0.82[EUR][1000 genomes]
rs11569216	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11569256	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13081914	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2861421	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34092379	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34486172	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34773643	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3811708	0.81[EUR][1000 genomes]
rs4315664	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4315665	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62283132	0.81[EUR][1000 genomes]
rs6440053	0.82[EUR][1000 genomes]
rs6440054	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9942	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141634200-141682000	Weak transcription	Brain Angular Gyrus	brain
3	chr3:141643000-141675800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr3:141644800-141678400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr3:141659400-141678400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:141659600-141676000	Weak transcription	Fetal Heart	heart
8	chr3:141659600-141676400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:141659600-141678200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:141659600-141678200	Weak transcription	NHDF-Ad	bronchial
11	chr3:141659600-141678400	Weak transcription	A549	lung
12	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:141666400-141687200	Strong transcription	Dnd41	blood
15	chr3:141667000-141685600	Weak transcription	Brain Substantia Nigra	brain
16	chr3:141668000-141686600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr3:141668600-141678400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr3:141670000-141683600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:141670000-141684000	Weak transcription	Colonic Mucosa	Colon
22	chr3:141670200-141681200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr3:141670600-141676200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:141670600-141676600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr3:141671400-141676800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:141671600-141677000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:141671600-141677400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr3:141671600-141677600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr3:141671600-141697400	Weak transcription	Gastric	stomach
30	chr3:141671800-141675600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:141671800-141675800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr3:141671800-141676000	Weak transcription	Fetal Lung	lung
33	chr3:141671800-141676400	Weak transcription	Adipose Nuclei	Adipose
34	chr3:141671800-141678000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:141671800-141681600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:141671800-141681800	Weak transcription	Primary B cells from peripheral blood	blood
37	chr3:141671800-141682200	Weak transcription	Pancreas	Pancrea
38	chr3:141671800-141682400	Weak transcription	Lung	lung
39	chr3:141671800-141686400	Weak transcription	HepG2	liver
40	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
41	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
42	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
43	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
44	chr3:141672000-141675600	Weak transcription	Fetal Muscle Trunk	muscle
45	chr3:141672000-141675800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr3:141672000-141675800	Weak transcription	Liver	Liver
47	chr3:141672000-141676200	Weak transcription	Primary B cells from cord blood	blood
48	chr3:141672000-141676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr3:141672000-141676400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:141672000-141676400	Weak transcription	GM12878-XiMat	blood

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