Variant report

Variant	rs34773643
Chromosome Location	chr3:141685947-141685948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141679111..141682072-chr3:141685599..141688176,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1045279	0.87[EUR][1000 genomes]
rs10804681	0.82[EUR][1000 genomes]
rs11569216	0.87[EUR][1000 genomes]
rs11569256	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13081914	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2861421	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34092379	0.87[EUR][1000 genomes]
rs34486172	0.86[EUR][1000 genomes]
rs3811708	0.81[EUR][1000 genomes]
rs4315664	0.89[EUR][1000 genomes]
rs4315665	0.89[EUR][1000 genomes]
rs62283132	0.81[EUR][1000 genomes]
rs6440053	0.82[EUR][1000 genomes]
rs6440054	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9815587	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9942	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3463554	chr3:141683870-141686109	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3463555	chr3:141683870-141686109	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
2	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:141660600-141698200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr3:141666000-141697600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr3:141666400-141687200	Strong transcription	Dnd41	blood
6	chr3:141668000-141686600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:141668600-141688600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:141669600-141696800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr3:141671600-141697400	Weak transcription	Gastric	stomach
10	chr3:141671800-141686400	Weak transcription	HepG2	liver
11	chr3:141671800-141691200	Weak transcription	Spleen	Spleen
12	chr3:141671800-141719000	Weak transcription	Placenta	Placenta
13	chr3:141671800-141724000	Weak transcription	Right Ventricle	heart
14	chr3:141671800-141735600	Weak transcription	Aorta	Aorta
15	chr3:141672000-141697000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:141672000-141700000	Weak transcription	Small Intestine	intestine
17	chr3:141672400-141688600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:141674400-141688000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:141674400-141690200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:141674400-141708000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:141674600-141700400	Weak transcription	Esophagus	oesophagus
22	chr3:141674600-141712600	Weak transcription	Fetal Brain Male	brain
23	chr3:141675400-141687000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:141675400-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:141675600-141687200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:141675600-141687200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr3:141675600-141687200	Strong transcription	Thymus	Thymus
28	chr3:141675800-141687200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:141676000-141687000	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:141676000-141687000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr3:141676000-141687000	Strong transcription	Fetal Thymus	thymus
32	chr3:141676200-141703800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:141676800-141688400	Weak transcription	Fetal Kidney	kidney
34	chr3:141677400-141696200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr3:141677800-141691200	Weak transcription	Brain Anterior Caudate	brain
36	chr3:141677800-141739000	Weak transcription	Left Ventricle	heart
37	chr3:141678200-141688600	Weak transcription	Primary B cells from cord blood	blood
38	chr3:141678600-141688600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:141678800-141745600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr3:141679400-141690600	Weak transcription	Colon Smooth Muscle	Colon
41	chr3:141679600-141697000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr3:141679800-141691400	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:141680000-141686600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:141680000-141690600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr3:141680000-141697800	Weak transcription	NH-A	brain
46	chr3:141680000-141711200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr3:141680000-141731200	Weak transcription	Fetal Brain Female	brain
48	chr3:141680200-141697600	Weak transcription	Osteobl	bone
49	chr3:141680400-141697600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr3:141680600-141690000	Weak transcription	NHLF	lung

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