Variant report

Variant	rs1157136
Chromosome Location	chr8:129901910-129901911
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11780321	0.99[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11783808	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11989880	0.90[AFR][1000 genomes]
rs11991292	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17818958	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1879163	0.84[AFR][1000 genomes]
rs1879164	0.84[AFR][1000 genomes]
rs2139456	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3857888	0.86[EUR][1000 genomes]
rs59067049	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72726590	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1157136	HHLA1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129896400-129902400	Weak transcription	HSMM	muscle
2	chr8:129896400-129902800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:129896400-129902800	Weak transcription	Osteobl	bone
4	chr8:129896800-129902800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:129896800-129903200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:129898200-129903200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:129899600-129909800	Weak transcription	Dnd41	blood
8	chr8:129900600-129902800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:129900600-129902800	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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