Variant report

Variant	rs59067049
Chromosome Location	chr8:129879610-129879611
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1157136	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11780321	0.81[AMR][1000 genomes]
rs11781488	0.92[AFR][1000 genomes]
rs11783808	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11989880	0.82[AFR][1000 genomes]
rs11991292	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17818958	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2139456	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3857888	0.88[EUR][1000 genomes]
rs72726590	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:129878600-129879800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:129878600-129880000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:129878800-129879800	Enhancers	NH-A	brain
8	chr8:129879000-129879800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:129879000-129880000	Enhancers	HSMM	muscle
10	chr8:129879000-129880200	Enhancers	NHDF-Ad	bronchial
11	chr8:129879000-129881400	Enhancers	Osteobl	bone
12	chr8:129879000-129881600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:129879200-129879800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:129879200-129879800	Enhancers	HMEC	breast
15	chr8:129879200-129879800	Enhancers	NHEK	skin
16	chr8:129879600-129880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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