Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:129868858..129872488-chr8:129878808..129881369,3	K562	blood:
2	chr8:128813410..128816212-chr8:129870107..129873143,3	MCF-7	breast:
3	chr8:128746642..128751324-chr8:129868978..129871457,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11780321	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783808	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11989880	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11991292	0.84[AFR][1000 genomes]
rs16903635	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17818346	0.91[EUR][1000 genomes]
rs17818958	0.83[AFR][1000 genomes]
rs17819888	0.86[ASN][1000 genomes]
rs1879163	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1879164	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4645529	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55788778	0.89[EUR][1000 genomes]
rs58858133	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs59067049	0.92[AFR][1000 genomes]
rs6996393	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72726589	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72726590	0.83[AFR][1000 genomes]
rs72726600	1.00[EUR][1000 genomes]
rs7828412	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9643240	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129864200-129873200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:129864200-129873200	Weak transcription	NH-A	brain
3	chr8:129864400-129873400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:129866600-129873200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:129867200-129873200	Weak transcription	Osteobl	bone
6	chr8:129867800-129870600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:129868000-129873000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:129869200-129871800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:129869200-129871800	Weak transcription	NHDF-Ad	bronchial
10	chr8:129869200-129873000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:129870200-129870800	Enhancers	Dnd41	blood
12	chr8:129870200-129871000	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:129870400-129871800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:129870400-129872400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: