Variant report

Variant	rs55788778
Chromosome Location	chr8:129839421-129839422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11781488	0.89[EUR][1000 genomes]
rs11786024	0.96[ASN][1000 genomes]
rs11989880	0.89[EUR][1000 genomes]
rs16903635	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17818346	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1879163	0.87[EUR][1000 genomes]
rs1879164	0.87[EUR][1000 genomes]
rs4645529	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58858133	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6996393	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72726589	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72726600	0.89[EUR][1000 genomes]
rs9643240	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3321643	chr8:129837395-129839943	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3361425	chr8:129837520-129840218	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129837200-129839600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:129839400-129841000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:129839400-129843800	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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