Variant report

Variant	rs72726589
Chromosome Location	chr8:129854330-129854331
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11780321	0.89[EUR][1000 genomes]
rs11781488	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11783808	0.82[AFR][1000 genomes]
rs11786024	0.97[ASN][1000 genomes]
rs11989880	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11991292	0.89[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs16903635	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17818346	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17818958	0.88[AFR][1000 genomes]
rs1879163	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1879164	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4645529	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55788778	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58858133	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6996393	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72726590	0.87[AFR][1000 genomes]
rs72726600	0.99[EUR][1000 genomes]
rs7828412	0.89[EUR][1000 genomes]
rs9643240	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612212	chr8:129851646-129861039	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv612213	chr8:129851646-129862009	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv612214	chr8:129851646-129862252	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129843800-129863600	Weak transcription	Dnd41	blood
2	chr8:129848000-129857200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129849600-129854800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:129852200-129857200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:129853400-129856800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:129853400-129856800	Weak transcription	HSMM	muscle
7	chr8:129853400-129856800	Weak transcription	Osteobl	bone
8	chr8:129853400-129857000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:129853400-129857600	Weak transcription	NHLF	lung
10	chr8:129853600-129857000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:129853600-129857000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr8:129853600-129857000	Weak transcription	NHDF-Ad	bronchial
13	chr8:129853600-129857200	Weak transcription	HSMMtube	muscle
14	chr8:129854200-129854400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:129854200-129854600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr8:129854200-129854800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr8:129854200-129854800	Enhancers	H9 Cell Line	embryonic stem cell
18	chr8:129854200-129854800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:129854200-129854800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:129854200-129854800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:129854200-129854800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr8:129854200-129855000	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links