Variant report

Variant	rs7828412
Chromosome Location	chr8:129912053-129912054
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11780321	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11781488	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11989880	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16903635	0.87[EUR][1000 genomes]
rs17818346	0.81[EUR][1000 genomes]
rs17819888	0.92[ASN][1000 genomes]
rs1879163	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1879164	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4645529	0.89[EUR][1000 genomes]
rs58858133	0.86[EUR][1000 genomes]
rs6996393	0.86[EUR][1000 genomes]
rs72726589	0.89[EUR][1000 genomes]
rs72726600	0.89[EUR][1000 genomes]
rs9643240	0.83[EUR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129910000-129912800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr8:129910200-129913600	Enhancers	Osteobl	bone
3	chr8:129910600-129913800	Enhancers	HSMM	muscle
4	chr8:129910800-129912400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:129911000-129912200	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:129911000-129912600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:129911200-129912200	Enhancers	Fetal Muscle Leg	muscle
8	chr8:129911200-129912600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr8:129911200-129913600	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr8:129911200-129913600	Enhancers	NHDF-Ad	bronchial
11	chr8:129911400-129913000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:129911400-129913000	Weak transcription	Psoas Muscle	Psoas
13	chr8:129911400-129913600	Enhancers	HSMMtube	muscle
14	chr8:129911600-129912600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:129911600-129912800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:129911600-129912800	Weak transcription	Left Ventricle	heart
17	chr8:129911600-129913000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:129911800-129912200	Enhancers	HMEC	breast
19	chr8:129911800-129912600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr8:129911800-129913000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr8:129911800-129913400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:129911800-129913600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:129912000-129913000	Weak transcription	Dnd41	blood
24	chr8:129912000-129913600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links