Variant report

Variant	rs17818346
Chromosome Location	chr8:129825597-129825598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10088832	0.85[EUR][1000 genomes]
rs11780321	0.82[EUR][1000 genomes]
rs11781488	0.91[EUR][1000 genomes]
rs11786024	0.90[ASN][1000 genomes]
rs11989880	0.91[EUR][1000 genomes]
rs16903635	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1879163	0.90[EUR][1000 genomes]
rs1879164	0.90[EUR][1000 genomes]
rs3857888	0.82[ASN][1000 genomes]
rs4645529	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55788778	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58858133	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6996393	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72726574	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72726589	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72726600	0.91[EUR][1000 genomes]
rs7828412	0.81[EUR][1000 genomes]
rs9643240	0.87[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17818346	PHF20L1	cis	cerebellum	SCAN
rs17818346	HHLA1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129820000-129825600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:129825200-129826400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129825400-129836800	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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