Variant report

Variant	rs1879163
Chromosome Location	chr8:129877052-129877053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1157136	0.84[AFR][1000 genomes]
rs11780321	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11781488	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11783808	0.92[AFR][1000 genomes]
rs11989880	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11991292	0.88[AFR][1000 genomes]
rs16903635	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17818346	0.90[EUR][1000 genomes]
rs17818958	0.88[AFR][1000 genomes]
rs17819888	0.97[ASN][1000 genomes]
rs1879164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645529	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55788778	0.87[EUR][1000 genomes]
rs58858133	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6996393	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72726589	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72726590	0.87[AFR][1000 genomes]
rs72726600	0.97[EUR][1000 genomes]
rs7828412	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9643240	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517445	chr8:129859924-129881299	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129872600-129877200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr8:129873200-129878000	Enhancers	Placenta	Placenta
3	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:129874800-129879000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:129874800-129879200	Weak transcription	HMEC	breast
6	chr8:129874800-129879200	Weak transcription	NHEK	skin
7	chr8:129875000-129879000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:129876000-129879000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:129876200-129879000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:129876400-129878800	Weak transcription	NH-A	brain
13	chr8:129876400-129879000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:129876400-129879000	Weak transcription	HSMM	muscle
15	chr8:129876400-129879400	Weak transcription	Fetal Stomach	stomach
16	chr8:129876600-129879000	Weak transcription	Osteobl	bone
17	chr8:129876800-129878600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr8:129876800-129878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:129876800-129879000	Weak transcription	NHDF-Ad	bronchial
20	chr8:129876800-129879000	Weak transcription	NHLF	lung
21	chr8:129876800-129879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links