Variant report

Variant	rs11572172
Chromosome Location	chr10:96797752-96797753
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11572101	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs11572123	0.97[AFR][1000 genomes]
rs11572124	0.96[AFR][1000 genomes]
rs11572181	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592737	1.00[CHB][hapmap]
rs11597626	1.00[CHB][hapmap]
rs12268020	1.00[CHB][hapmap]
rs12571878	0.99[AFR][1000 genomes]
rs12779363	1.00[CHB][hapmap]
rs1341158	0.99[AFR][1000 genomes]
rs1578437	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1934980	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs2148551	0.92[YRI][hapmap];0.99[AFR][1000 genomes]
rs2153628	1.00[CHB][hapmap]
rs3758580	0.86[YRI][hapmap]
rs7089580	1.00[CHB][hapmap]
rs7897079	1.00[CHB][hapmap]
rs7917837	0.96[AFR][1000 genomes]
rs9332104	1.00[CHB][hapmap]
rs9332116	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs9332128	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs9332168	1.00[CHB][hapmap]
rs9332174	1.00[CHB][hapmap]
rs9332198	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs947172	0.99[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1050544	chr10:96766934-96814689	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1044182	chr10:96783996-96814689	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	esv2761618	chr10:96784008-96814689	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96795000-96798200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr10:96796400-96805400	Strong transcription	Liver	Liver
3	chr10:96797600-96798400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:96797600-96800400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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