Variant report

Variant	rs9332116
Chromosome Location	chr10:96700779-96700780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10509676	1.00[YRI][hapmap]
rs1074145	0.91[AFR][1000 genomes]
rs11572101	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs11572172	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs12571421	0.87[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap]
rs12767583	0.86[ASW][hapmap];1.00[YRI][hapmap]
rs12768009	0.87[ASW][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap]
rs12773342	1.00[YRI][hapmap]
rs12775707	0.84[AFR][1000 genomes]
rs1322179	0.87[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs17878649	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17882572	0.86[ASN][1000 genomes]
rs17886522	0.86[ASN][1000 genomes]
rs1934961	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1934962	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1934980	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs2093434	0.85[AFR][1000 genomes]
rs2860903	0.90[AFR][1000 genomes]
rs3758580	1.00[YRI][hapmap]
rs4244285	1.00[YRI][hapmap]
rs4589212	0.84[AFR][1000 genomes]
rs4641393	0.87[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap]
rs4986893	0.86[ASN][1000 genomes]
rs4986894	0.87[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap]
rs56061138	0.86[ASN][1000 genomes]
rs56825054	0.92[ASN][1000 genomes]
rs57554269	0.86[ASN][1000 genomes]
rs58800757	1.00[ASN][1000 genomes]
rs59527999	0.86[ASN][1000 genomes]
rs7078494	0.86[ASN][1000 genomes]
rs7079533	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs74154111	0.86[ASN][1000 genomes]
rs7921656	0.86[ASN][1000 genomes]
rs9332096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332118	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332121	0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9332127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332128	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332129	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332136	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332139	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332149	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332181	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9332198	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9332219	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332223	1.00[CHB][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9332228	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9663206	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1035409	chr10:96495177-96832057	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3336672	chr10:96543010-96711519	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1037973	chr10:96563228-96711744	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1047782	chr10:96581094-96718479	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv551962	chr10:96680265-96734339	Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96698600-96702000	Weak transcription	Fetal Intestine Large	intestine
2	chr10:96699200-96702800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:96699600-96701600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:96700600-96700800	Flanking Active TSS	Liver	Liver

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